Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00422 ATGGCACTGGCCAAAGACCGAAAAATTCCACATGATTCAAGCATGAGCAGCAAGGTTCAAAAGACTATTTTCAGTAAGTACCACAAATCTGTGCTAGAAGAGGAAGATGGCTCACAAACTGTTAATGGTCTCAGCAATGATTCAGCTGTGAGTGTAACACATTCTCCTCCTATATGTGTCAGTGGCAAAGGGAATGCTTATAAGGGAAAAAACTATCAGCTTGAAGATAAAGAATCGCTGATTCATTTCAAAGGGTATAGCAATATGATGCAAGCTGGTGAATCTTTGCTTAGCTTTCAGTACTTGAAAGATAGTAGTCTGAAAGAGTACTGTGTTTGGGAGAATAATTTGCATCAAGGTCATACTCATAACCACTGGATTCAGACTAGTCCGAGAAGCCCTAGAGACATGCGCATGGTACAAGATTTGAATTGCTTTCAAACTGCTAGTGGCTATAGCTCCATAGCTGATAAAGCTAAAGAGAAGCAACGTGGCCAAAGTTCATCTGGGTGGCTCTACTCAGCACCAACTATCCCTAATGATAGTAGCCTCCACAAGTTAGGAGCACAAGAATCAGTTTTGCAAAAACGCCCTTCTATGGGAGTGAACATGAAAGCTGCCAAGAAGCAATGCACAACTGAGAGTATAAAGCCAAAGCATAAGACAAGCCCATCAAAGGATCCTCAAAGTGTGGCTGCAAAGAACCGAAGAGAGAGGATAAGTGAGCGGTTGAAGATACTACAAGAACTTGTGCCTAATGGCTCCAAGGTTGATTTGGTTACTATGCTGGAGAAAGCAATTAGCTATGTAAAGTTTCTTCAATTGCAAGTGAAGGTGTTGGCAACTGATGAATTTTGGCCTGTCCAAGGTGGAAAACCTCCTGATATTTCTCAAGTAAAGGAAGCCATCGATGCCATTCTTTCATCACAAAGAGAGAGACGTTCAAGCTCAACGTAG 957 0.419 MALAKDRKIPHDSSMSSKVQKTIFSKYHKSVLEEEDGSQTVNGLSNDSAVSVTHSPPICVSGKGNAYKGKNYQLEDKESLIHFKGYSNMMQAGESLLSFQYLKDSSLKEYCVWENNLHQGHTHNHWIQTSPRSPRDMRMVQDLNCFQTASGYSSIADKAKEKQRGQSSSGWLYSAPTIPNDSSLHKLGAQESVLQKRPSMGVNMKAAKKQCTTESIKPKHKTSPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKPPDISQVKEAIDAILSSQRERRSSST 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00422 318 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 309 - -
Cca01g00422 318 CDD bHLH_AtIND_like 225 287 - -
Cca01g00422 318 Gene3D - 218 281 IPR036638 GO:0046983
Cca01g00422 318 SMART finulus 230 279 IPR011598 GO:0046983
Cca01g00422 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 224 283 IPR036638 GO:0046983
Cca01g00422 318 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 309 - -
Cca01g00422 318 MobiDBLite consensus disorder prediction 197 237 - -
Cca01g00422 318 Pfam Helix-loop-helix DNA-binding domain 234 274 IPR011598 GO:0046983
Cca01g00422 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 224 273 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00422 Cca-Chr1 5071968 5073618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00422 74 318 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 49.402 8.63e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca01g00422 HLH 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00422 - - gmx:100810010 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00422 01 5071968 5073618 Cca05g01466 05 33440074 33442124 PCT