Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00421 ATGGAGAGtcctcattcgctctctccctcttcctcgtcctcctactcctccGACGGCGTCGGCTTCGAGACGGAGGAGCCGCGGACGCCGCTGGCCGTGCGCCGCGCGCTGCAGCTCCTCAGCTCCGGCGACCCCGACCTCCGACTCCAAGCCGCGCGCGACATACGCCGCCTCACCAAGACGTCCCACCGCTGTCGCCGACAGCTCGCCGAGGCTGTCGGTCCGCTCGTTTCCATGCTCCGAGTCGACTCGCCCGAGTCCCACGAACCCGCTCTCCTCGCCTTGCTCAACCTCGCCGTCAAAGACGAAAAGAATAAAATCAGTATCGTGGAGGCCGGTGCATTGGAACCTATAATTAGTTTCCTCAAATCTCAACATCAAAATCTGCAGGAGTCTGCAACTGCATCTTTGCTCACACTATCTGCCTCTTCAACCAACAAACCAATTATTAGTGCTTGTGGTGCCATTCCTCTTCTTGTGGAGATCCTTAGGGATGGAAGCCCCCAAGCTAAAGCTGATGCAGTAATGGCTCTCTCTAATTTATCAACATACCCTAATAATCTCGGCATCATTCTTGAGACAAACCCAATCCCTTTCATAGTTGATCTTATTAAAACCTGTAAAAAATCCTCAAAAACAGCTGAAAAATGCTGTGCTTTGATAGAATCCTTGGTGGAGTATGATGAGGGAAGAACTGCCTTGACATCGGAAGAAGGCGGGGTTCTTGCAGTTGTGGAAGTCCTGGAAAGCGGCACTCTTCAAAGTAGGGAGCATGCGGTTGGAGCACTGTTGACAATGTGCCAAAGTGATCGATGTAAATACAGGGAACCAATTCTTAGAGAAGGTGTCATTCCAGGACTTCTAGAACTTACTGTTCAAGGAACACCCAAGTCTCAAACAAAAGCACGTACCCTCTTGCAGTTACTGAGAGAGTCTCCTTATCCGAGATCTGAAATTCAACCTGACACGCTTGAGAATATAGTATGCAACATCATATCCCAGATTGATGGGGATGATCAATCTGGTAAAGCTAAGAAGATGCTTGCTGAGATGGTCCAAGTCAGCATGGAACAGAGTCTGAGACATTTACAGCAGAGGGCTCTCGTATGCACACCAAGCGATCTTCCTATAGCTGGCTGTGCTTCTGAAGTTTCTTCAAAATGA 1164 0.4777 MESPHSLSPSSSSSYSSDGVGFETEEPRTPLAVRRALQLLSSGDPDLRLQAARDIRRLTKTSHRCRRQLAEAVGPLVSMLRVDSPESHEPALLALLNLAVKDEKNKISIVEAGALEPIISFLKSQHQNLQESATASLLTLSASSTNKPIISACGAIPLLVEILRDGSPQAKADAVMALSNLSTYPNNLGIILETNPIPFIVDLIKTCKKSSKTAEKCCALIESLVEYDEGRTALTSEEGGVLAVVEVLESGTLQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQTKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCASEVSSK 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00421 387 MobiDBLite consensus disorder prediction 1 20 - -
Cca01g00421 387 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 11 370 - -
Cca01g00421 387 SUPERFAMILY ARM repeat 33 337 IPR016024 -
Cca01g00421 387 SMART arm_5 184 226 IPR000225 GO:0005515
Cca01g00421 387 SMART arm_5 61 100 IPR000225 GO:0005515
Cca01g00421 387 SMART arm_5 143 183 IPR000225 GO:0005515
Cca01g00421 387 SMART arm_5 228 268 IPR000225 GO:0005515
Cca01g00421 387 SMART arm_5 102 142 IPR000225 GO:0005515
Cca01g00421 387 MobiDBLite consensus disorder prediction 1 27 - -
Cca01g00421 387 PANTHER U BOX DOMAIN-CONTAINING 11 370 - -
Cca01g00421 387 Pfam Armadillo/beta-catenin-like repeat 146 182 IPR000225 GO:0005515
Cca01g00421 387 Pfam Armadillo/beta-catenin-like repeat 103 140 IPR000225 GO:0005515
Cca01g00421 387 Gene3D - 187 363 IPR011989 -
Cca01g00421 387 Gene3D - 25 186 IPR011989 -
Cca01g00421 387 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 113 155 IPR000225 GO:0005515
Cca01g00421 387 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 154 187 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00421 Cca-Chr1 5034431 5038422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00421 33 310 U-box Gene Family AT2G23140 33.571 7.12e-40 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00421 - - gmx:100780954 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00421 01 5034431 5038422 Cca05g01467 05 33456038 33460287 PCT