Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00415 ATGAGAAAACCTTGTTGTGACAAAGAAGGCACAAACAAAGGTGCTTGGTCCAAGCAAGAGGACCAAAAGCTCATTGATTACATCAGAACTCATGGGGCAGGACGTTGGTGTTCCCTTCCCAAGGCTGCAGGACTACATCGTTGTGGCAAAAGCTGTAGGTTGAGATGGATAAACTACTTGCGACCGAACATTAAACGCGGGAACTTTGCGCAGGATGAAGAAGACCTCATCATCAAACTCCATGCCCTCCTTGGCAACCGGTGGTCACTGATTGCTGGAAGGTTGCCAGGTCGCACAGATAACGAGGTGAAAAACTATTGGAACTCTCACATACGCAGAAAGCTAATTAAGATGGGAATTGATCCCAACAACCACAAGCTACACCAAACCTTTCCAGTTCCAAAACCTTGTCATATTTCACGACCTGCTAGTACCGCACAATCTTCTGCCAACAATGATAGAATTTCTGACACACACAGTTGTCTTGCAGAAGAAACAGCAACAACGCTTTCTTCAACACCCCACTTAAACCTTGACCTAACCATTGCATTCCCTTCATCACCTGCACATGCTCTTCTTCAACACAAATCTAAACCTACAACTACAAGGAACATCATCCATGACCATCAGGATTCTGCTCCCACTGGCCTTCTCCTTTTTCTGTGA 666 0.455 MRKPCCDKEGTNKGAWSKQEDQKLIDYIRTHGAGRWCSLPKAAGLHRCGKSCRLRWINYLRPNIKRGNFAQDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKLHQTFPVPKPCHISRPASTAQSSANNDRISDTHSCLAEETATTLSSTPHLNLDLTIAFPSSPAHALLQHKSKPTTTRNIIHDHQDSAPTGLLLFL 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00415 221 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Cca01g00415 221 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Cca01g00415 221 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 220 - -
Cca01g00415 221 MobiDBLite consensus disorder prediction 137 156 - -
Cca01g00415 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Cca01g00415 221 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Cca01g00415 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Cca01g00415 221 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Cca01g00415 221 SMART sant 65 113 IPR001005 -
Cca01g00415 221 SMART sant 12 62 IPR001005 -
Cca01g00415 221 CDD SANT 68 111 IPR001005 -
Cca01g00415 221 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Cca01g00415 221 MobiDBLite consensus disorder prediction 141 156 - -
Cca01g00415 221 CDD SANT 15 60 IPR001005 -
Cca01g00415 221 Gene3D - 13 65 - -
Cca01g00415 221 Gene3D - 68 132 - -
Cca01g00415 221 PANTHER MYB TRANSCRIPTION FACTOR 2 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00415 Cca-Chr1 4955618 4957008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00415 2 203 MYB Transcription Factor Family AT4G38620 50.885 3.47e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca01g00415 Myb_DNA-binding 2.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00415 K09422 - tcc:18601922 310.457