Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00413 ATGGGTTGCTTCTTTAGTGTGCCTCCAAAGATCAAAGCTGAAAGCCCTCCACGTAATGGTTTGGACTCAAAGGATGGTAGTAAAGAAGAGAATGGTTTGAGTGGTTTAAGTGGCAAGGTGTCCTCTTCATCTATGCTTCTAACTCCTCAGAGTGAGGATGAGATATTGCAGTGCAGCAATTTGAAGTGTTTCACATTCAATGAGCTAAGAACTGCTACAAGGAACTTTCGTCCTGATAGTATGGTTGGTGAAGGTGGTTTTGGTTCTGTGTTTAAGGGTTGGATTGATGAGCAGACACTTGCCCCTACTAAACCAGGGACAGGAATGGTCATTGCTGTGAAGAGGCTTAACCAAGAAAGCCGCCAGGGACATAGTGAATGGTTGACAGAAATCAACTACCTGGGGCAGCTGAGTCATCCTAATCTTGTGAAACTAATTGGTTACTCTTTAGAGGATGATCACCGGATCTTGGTGTATGAATTTGTGGCCAAGGGTAGTTTGGATAATCACCTGTTCAGGAGGGCTTCTTACTTTCAACCACTCTCTTGGACCATACGTATGAAGGTTGCTATTGATGCTGCTAAGGGTCTTGCATTTCTTCACAGTGATGAAGTTGATGTAATATATAGGGACTTCAAAACTTCTAATATCTTACTTGATTCTAACTATAATGCAAAACTCTCAGATTTTGGGTTGGCAAAAAATGGGCCAGAAGGAGATAAGAGCCATGTCTCTACAAGGGTAATGGGCACCTTTGGCTACGCAGCTCCTGAGTATGTTTCCACAGGTCACCTAACCAAAAAGAGTGACGTGTACAGTTTTGGAGTTGTTCTGCTGGAACTAATGTCAGGAAAACGTGCACTGGACAACAACAGGCCAAACGGGGAGCATAACTTGGTTGAATGGGCCAAACCACTTCTCATCAACAAAAAGAAGATTTCACAAGTCATGGATTCTCGCATAGAAGGCCAATACTCAAAGAGAGAAGCAAAGAGAATAGCTCACCTAGCAATTCTATGCTTGTCTACAGAACAAAAAGTGAGACCAAACATAGATGAGGTGGTGAGATCATTGGAACATCTTCAGGAGTCCAAAGACACAGGTGATGATGCAGTTGGAAACTCTCAGTGTCAAGATCAAACCATTAAAATAAATGGTCGTAATAGCTCAAGCAATAGTGGCACTCCTAATCCAAGTTTATATCCTTCTCCTCTTCGTACATAG 1224 0.4257 MGCFFSVPPKIKAESPPRNGLDSKDGSKEENGLSGLSGKVSSSSMLLTPQSEDEILQCSNLKCFTFNELRTATRNFRPDSMVGEGGFGSVFKGWIDEQTLAPTKPGTGMVIAVKRLNQESRQGHSEWLTEINYLGQLSHPNLVKLIGYSLEDDHRILVYEFVAKGSLDNHLFRRASYFQPLSWTIRMKVAIDAAKGLAFLHSDEVDVIYRDFKTSNILLDSNYNAKLSDFGLAKNGPEGDKSHVSTRVMGTFGYAAPEYVSTGHLTKKSDVYSFGVVLLELMSGKRALDNNRPNGEHNLVEWAKPLLINKKKISQVMDSRIEGQYSKREAKRIAHLAILCLSTEQKVRPNIDEVVRSLEHLQESKDTGDDAVGNSQCQDQTIKINGRNSSSNSGTPNPSLYPSPLRT 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00413 407 SUPERFAMILY Protein kinase-like (PK-like) 56 360 IPR011009 -
Cca01g00413 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Cca01g00413 407 MobiDBLite consensus disorder prediction 368 407 - -
Cca01g00413 407 PANTHER OS01G0588500 PROTEIN-RELATED 28 391 - -
Cca01g00413 407 Pfam Protein tyrosine and serine/threonine kinase 80 358 IPR001245 GO:0004672|GO:0006468
Cca01g00413 407 PANTHER KINASE 1B 28 391 - -
Cca01g00413 407 Gene3D Phosphorylase Kinase; domain 1 50 161 - -
Cca01g00413 407 MobiDBLite consensus disorder prediction 362 407 - -
Cca01g00413 407 Gene3D Transferase(Phosphotransferase) domain 1 162 384 - -
Cca01g00413 407 CDD STKc_IRAK 82 361 - -
Cca01g00413 407 ProSitePatterns Protein kinases ATP-binding region signature. 82 114 IPR017441 GO:0005524
Cca01g00413 407 ProSiteProfiles Protein kinase domain profile. 76 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00413 407 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00413 Cca-Chr1 4927668 4932215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00413 62 366 Glycoside Hydrolase AT3G07070 48.208 2.45e-100 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca01g00413 PK_Tyr_Ser-Thr 3.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00413 - - gmx:106795104 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00413 01 4927668 4932215 Cca05g01476 05 33563518 33567715 PCT