Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00412 ATGGCAATTGGGTTCATGGAGGTGCAGCTTGTGAAGGCAAAAGAGTTGTGGCATACTGATATCTTAGGTGGTATGGATCCGTATGTTGTGATTCAATACAATGGCCAAGAACAGAGGAGCAGTGTTGCAAAGGGAGAGGGTAGTAATCCAATTTGGAATGAGAAATTTGTGTTCAAGGTGGAATATCCTACACCAAGTCATTCATACAAGATCATTCTAAAAATCATGGACAAAGACAATTTATCTAAAGATGACTTCGTTGGTCAAGCCACGATCTATGTGGAGGATTTATTAGCCATAGGAGTAAAGGATGGTGTAAATGAGTTACAACTTCTCAAATACAGAGTAGTTCGTGCAGATCAATCTTATTGTGGAGAAATTGATGTTGGTGTAACTTTTAAGGTGGAAGAAGATTTCATTGGAAAAGTTAAACAAGGATGGAAGGACACCAACAAGCATTTGTAA 465 0.3849 MAIGFMEVQLVKAKELWHTDILGGMDPYVVIQYNGQEQRSSVAKGEGSNPIWNEKFVFKVEYPTPSHSYKIILKIMDKDNLSKDDFVGQATIYVEDLLAIGVKDGVNELQLLKYRVVRADQSYCGEIDVGVTFKVEEDFIGKVKQGWKDTNKHL 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00412 154 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 133 IPR035892 -
Cca01g00412 154 Gene3D C2 domain 2 135 IPR035892 -
Cca01g00412 154 PANTHER C2 DOMAIN-CONTAINING 1 149 - -
Cca01g00412 154 SMART C2_3c 5 106 IPR000008 -
Cca01g00412 154 ProSiteProfiles C2 domain profile. 1 107 IPR000008 -
Cca01g00412 154 Pfam C2 domain 6 104 IPR000008 -
Cca01g00412 154 PANTHER ELICITOR-RESPONSIVE PROTEIN 1 1 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00412 Cca-Chr1 4921658 4925981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00412 3 109 C2H2 Transcription Factor Family AT4G21160 31.481 2.05e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00412 - - gmx:100526962 248.825