Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00405 ATGTTCCGGTTGGTTATCTACATGGGATTATGGGGTTCATTATATGGTGGGGTTTCTGGTGCCTTGTACTCGTGCATCGGTGATAACTTTCTTTATGGTTGTTCAATGCCAAGTCTTCCCAAATGCAGAAATAATGATAGTTTATATTTGGGTAATTGGAGTAGCTATGGGGTAATGTCAAGTAAGGGGTTCGTATTTGATGAAAGTGAAAATCTCAGCAATTTTGATTGCTGGATGAAGTGCTTGAATAATTGCACGTGTGAGGCTTACTCTTATGTGAATGAGGATGCAACTGGCTGTGAGATTTGGAGTAAGGACTCTGCAAAATTTGTTGCCACTAATAATTTCACAGCTGGGGGCCGTCATATCTACTTCCTTCGCAAGAAAAAAGCCGAAAATCGTAAGAAGCGAACAATGTTATTGTCTGAAATTGGAGGAAACACTGCAAAATCCATTGTATACAGTGAAAGAAGAGAACATAGGAAAGAAAAAAGGAGAAATGATGATACACATATATTTGACCTTCAAACCATTCTTGAGGCAACCTCTAATTTTTCTTCCACCAATAAGATAGGGGAGGGTGGCTTTGGACCTGTCTACAAGGGAAAGCTACCAAATGGGCAAGAAGTAGCTATAAAAAGGCTTTCCAAAAGTTCGGGACAGGGGTTGATAGagttcaaaaatgaagcgatgctaattgtgaaactccaacacactaacttagtgaagctacttggtttttgcatcgacaaagaagaaaggatattagtttatgagtacttgcctaacAAAAGTTTGAATTTATATCTCTTCGTAGATTCCAACAAAAAGAGTGTATTAGATTGGAAGATAAGATGCAAAATCATAGAAGGAATTGCTCAAGGACTCGTATATTTACACCAATATTCAAGATTGAAAGTGATACATAGAGACTTGAAGGCAAGCAACATTTTATTGGATAATGAATTGAATCCAAAGATATCAGATTTTGGCATGGCTCGAATATTCGGGTTAATAGAATCTGAAGAATTAACTAATCGAATTGTTGGAACATATGGTTATATGTCTCCGGAGTACGCAATGATGggtgtcatctcaactaaaactgatgtttatagttttggcatcttattgttagagatTCTAAGTGGAAAGAAAAATCGTAACGATTACCCATTCAATCTTGTTGTTTATGCCTGGAAATTATGGAATGAAGGTGAAGGTCTAATGTTAATGGACAGGGCATTGGGTGGATCATACCCACCTATCCAAGTGTTACGCTACATTCATGTTGGTCTCTTATGCACACAAGATCAAGCAAGTGATAGACCCACTATGCTTGAGGTTGTTTCTTTTCTTTCAAATGAAACTGCCCATTTACCACCACCAAAACAACCAGGACTATGTATCTTTGAAGACATGGAAGAGGTAGAACAACTCAATAGTTGTTCCATAAATGATACAACAGATTCATTAACATCAGAACAGAGGAGAGATGGAAGAACAAGTGATGTTATGTATTTTTTCGACTTTCAAACTATTCTTGAGGAACCTACTAATTTTTCTTCCTCCAATAAGATAGGGGAGGGTGGCTTTGGACCTGTTTACAAGGGAAAGCTGCCAAGTGGACAAGAAATA 1638 0.3407 MFRLVIYMGLWGSLYGGVSGALYSCIGDNFLYGCSMPSLPKCRNNDSLYLGNWSSYGVMSSKGFVFDESENLSNFDCWMKCLNNCTCEAYSYVNEDATGCEIWSKDSAKFVATNNFTAGGRHIYFLRKKKAENRKKRTMLLSEIGGNTAKSIVYSERREHRKEKRRNDDTHIFDLQTILEATSNFSSTNKIGEGGFGPVYKGKLPNGQEVAIKRLSKSSGQGLIEFKNEAMLIVKLQHTNLVKLLGFCIDKEERILVYEYLPNKSLNLYLFVDSNKKSVLDWKIRCKIIEGIAQGLVYLHQYSRLKVIHRDLKASNILLDNELNPKISDFGMARIFGLIESEELTNRIVGTYGYMSPEYAMMGVISTKTDVYSFGILLLEILSGKKNRNDYPFNLVVYAWKLWNEGEGLMLMDRALGGSYPPIQVLRYIHVGLLCTQDQASDRPTMLEVVSFLSNETAHLPPPKQPGLCIFEDMEEVEQLNSCSINDTTDSLTSEQRRDGRTSDVMYFFDFQTILEEPTNFSSSNKIGEGGFGPVYKGKLPSGQEI 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00405 546 Gene3D Transferase(Phosphotransferase) domain 1 261 460 - -
Cca01g00405 546 CDD STKc_IRAK 191 453 - -
Cca01g00405 546 Pfam PAN-like domain 72 106 IPR003609 -
Cca01g00405 546 ProSiteProfiles Protein kinase domain profile. 185 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00405 546 SUPERFAMILY Protein kinase-like (PK-like) 168 471 IPR011009 -
Cca01g00405 546 SMART serkin_6 185 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00405 546 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 496 546 - -
Cca01g00405 546 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 56 473 - -
Cca01g00405 546 PANTHER OS01G0783800 PROTEIN 496 546 - -
Cca01g00405 546 PANTHER OS01G0783800 PROTEIN 56 473 - -
Cca01g00405 546 ProSiteProfiles PAN/Apple domain profile. 42 129 IPR003609 -
Cca01g00405 546 Gene3D Phosphorylase Kinase; domain 1 146 260 - -
Cca01g00405 546 Gene3D Phosphorylase Kinase; domain 1 484 546 - -
Cca01g00405 546 Pfam Protein kinase domain 186 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00405 546 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Cca01g00405 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 307 319 IPR008271 GO:0004672|GO:0006468
Cca01g00405 546 SMART ntp_6 48 128 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00405 Cca-Chr1 4793938 4809535 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00405 494 546 Receptor kinase-like Gene Family AT4G23190 49.057 5.31e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca01g00405 Pkinase 1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00405 - - pvu:PHAVU_001G233000g 769.615