Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00400 ATGAGTTTTGTTTTTCGAGGAACAAGAGCAGATATTGAAAATGGGTTTCCAGGATTTATACCTGAGAGGCGAGCATTGCGCGTTCATGCAGCACGTCCTAGTAATTCTAATTCACTCACTTTTCTTGTGACAGTTCTTCTGTTATTCATGATACTGAACTCTCACCAGATGTCCCCTAACTTTCTGCTCTGGCTGGTGCTTGGCGTTTTCTTGATGGCAACAATGTTGAGGATGTATGCAACATGTCAACAGCTCCAAGCACAGGCCCAAGCTCATGCAGCAGCAGCCAGTGGCATTCTTGGCCACACGGAACTGAGGTTGCATATGCCACCATCAATAGCACTTGCAAGTCGAGGGCGTCTGCAGGGTCTCAGACTTCAGCTTGCACTTCTTGATCGGGAGTTTGATGATCTTGATTATGAAACTTTAAGAGCTTTGGATTCCGATAATGTTTCTACTGCACCTTCTATGACCGAGGAAGAGATTAATGCTCTTCCTGTCCACAAATATAAGGTTTCTGGTCCCCAAAGCAGTAGTTCCTCAATGCAACAAGCATCATCTTCCGCATCTGTTGAGAAGAAGCAAGATAATTCAAATGCTGTTGGGAGCATGAAAGCCTCTGACGATGAACTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTTGGTGATGTACTGCGTAGCTTACCTTGCTTGCACCAGTTTCACGCGAATTGCATCGACCCCTGGCTGCGCCAACAAGGGACATGCCCTGTATGTAAATTTCGAGCTGGATCTGGGTGGAATGAGAATGGACATAATGATATCGCGGACATGGTTTGA 822 0.4574 MSFVFRGTRADIENGFPGFIPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGILGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVSGPQSSSSSMQQASSSASVEKKQDNSNAVGSMKASDDELTCSVCLEQVNVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSGWNENGHNDIADMV 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00400 273 ProSiteProfiles Zinc finger RING-type profile. 213 254 IPR001841 -
Cca01g00400 273 CDD RING-H2_PA-TM-RING 212 254 - -
Cca01g00400 273 PANTHER TARGET OF ERK KINASE MPK-1 1 268 - -
Cca01g00400 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 259 IPR013083 -
Cca01g00400 273 SUPERFAMILY RING/U-box 208 257 - -
Cca01g00400 273 MobiDBLite consensus disorder prediction 172 204 - -
Cca01g00400 273 SMART ring_2 213 253 IPR001841 -
Cca01g00400 273 Pfam Ring finger domain 212 254 IPR001841 -
Cca01g00400 273 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 1 268 - -
Cca01g00400 273 MobiDBLite consensus disorder prediction 164 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00400 Cca-Chr1 4656547 4661504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00400 1 273 C3H Transcription Factor Family AT3G55530 77.536 2.89e-147 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00400 K16283 - gmx:100777936 467.618