Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00398 ATGGGAAGGGAAAATGCACGCCAAAACGCTCATTTGAGTAAACTAATGACGTTATTTGAATTTGCGGGCGCGGATCCACTTCCGCTCCTCCGAGATCTACCCAATGATGTCTTCGGGGACATCCTCGTACTGGTGCTACCGTTGCAGCCGCTTCGTCCGTGTCATGCTTCAAGACGACGCAGCCACCGCCCTCGTCTGCCCCGACTGCGACGGCGGCTTCATCGAGCAGATCGACCACCCCGTCGACAACCGCCGCCGCCGCTTCCCAACCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCTCCCCCTTCAACCCCGTCATCGTCCTCCGCGGCGCCGCCGAGGAGAGCCGCGGCTTCGAACTCTTCTACGACGACGGCGCCGGCTCCGGCCTCCGACCCTTGCCGCCGAGCATGTCGGAGTTTCTTCTCGGATCTGGCTTCGATAGGCTTCTGGAGCAACTTTCTCAGATCGAGATCAACGGAATTGGGAGATACGAGCACCCCCCGGCGTCAAAATCGGCCATTGATTCGTTACCAACGCTGGAAATCAATGATGGTCATTTGTCTTCGGAGTCGCACTGCGCGGTTTGCAAGGAAGCTTTCGAGTTAGGCACTGCGGTGAGGGAAATGCCGTGTAAGCATATATACCACCCTGAATGCATATTACCGTGGCTCGCACTTCACAACTCATGCCCCGTTTGTCGGCACGAGTTACCTGTGGATTCTCCAAATTCAAATTTGAATCAGGGTCAAAATGTTGGCTTTAGCGAGGAAGAGAACGTGGGGTTGACGATTTGGAGGTTGCCCGGTGGAGGGTTTGCCGTGGGGAGATTCTCCGGCGGTAGGAGAGGCGGCGAGAGGGAGCTTCCGGTGGTGTACACTGAGATGGACGGTGGATTCAACAATGGGGGTGAGCCGAGGAGGATTTCGTGGTCTTCGAGGGGGAGTAGAGGGAGAGAGAGTGGAGGGTTGAACCGGTTTTTCAGGAATTTGTTTGGTTGCTTCAGAggtggtggtggtggtggtggtggtTCTAGTACAGAGTCCATGAGGGCGAGTTCTTCTCGGTCTAGTATGGTTCCCTCTCCGCGTTCGCGCAGGACTTGGTCTATGGATGTAAACAGTGGGATGAGAGCGTGGATTTGTGTATCTTTGGAATTTTTGGGGGTGGCTGGGGAGTTCCTAGAAGCCTTTGACACGTGCAAACCTGTGACGGTTGTAAGCAAACTATAA 1458 0.4513 MGRENARQNAHLSKLMTLFEFAGADPLPLLRDLPNDVFGDILVLVLPLQPLRPCHASRRRSHRPRLPRLRRRLHRADRPPRRQPPPPLPNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPFNPVIVLRGAAEESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKSAIDSLPTLEINDGHLSSESHCAVCKEAFELGTAVREMPCKHIYHPECILPWLALHNSCPVCRHELPVDSPNSNLNQGQNVGFSEEENVGLTIWRLPGGGFAVGRFSGGRRGGERELPVVYTEMDGGFNNGGEPRRISWSSRGSRGRESGGLNRFFRNLFGCFRGGGGGGGGSSTESMRASSSRSSMVPSPRSRRTWSMDVNSGMRAWICVSLEFLGVAGEFLEAFDTCKPVTVVSKL 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00398 485 SUPERFAMILY RING/U-box 249 317 - -
Cca01g00398 485 Pfam Ring finger domain 268 310 IPR001841 -
Cca01g00398 485 ProSiteProfiles Zinc finger RING-type profile. 269 310 IPR001841 -
Cca01g00398 485 MobiDBLite consensus disorder prediction 414 443 - -
Cca01g00398 485 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 174 408 - -
Cca01g00398 485 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 174 408 - -
Cca01g00398 485 Coils Coil 175 175 - -
Cca01g00398 485 MobiDBLite consensus disorder prediction 56 98 - -
Cca01g00398 485 CDD RING-H2_RNF126_like 269 310 - -
Cca01g00398 485 MobiDBLite consensus disorder prediction 56 78 - -
Cca01g00398 485 SMART ring_2 269 309 IPR001841 -
Cca01g00398 485 Pfam Protein of unknown function (DUF1117) 336 433 IPR010543 -
Cca01g00398 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 316 IPR013083 -
Cca01g00398 485 MobiDBLite consensus disorder prediction 421 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00398 Cca-Chr1 4635202 4640052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00398 208 319 C3H Transcription Factor Family AT5G01980 41.964 1.94e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00398 - K11982 gmx:100807324 402.519