Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00396 ATGGCTTCAAACTCGATGAACAACAACAAAGAACATTTTCCCACTTGGACAAGATTGCAGAACAAACAATTTGAAAGGGCATTGGCCTTGTATGATGAAGACACCCCAGATCGGTGGCAAAATATTGCCAAAGAAGTTGGCAATAAATCGGTGGAGGAAGTGAAGAGACATTATGCAATTCTTTTGGAAGATCTTAGTAGTATAGAGTCGGGGCATGTTCCAATTCCCGATTATGATTTCTCAGAAAACATGGATGATGATGATCATGTAGAGAGGCATCCCAAGTATCTTAGTTTGAATTGA 303 0.396 MASNSMNNNKEHFPTWTRLQNKQFERALALYDEDTPDRWQNIAKEVGNKSVEEVKRHYAILLEDLSSIESGHVPIPDYDFSENMDDDDHVERHPKYLSLN 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00396 100 SUPERFAMILY Homeodomain-like 16 69 IPR009057 -
Cca01g00396 100 Gene3D - 8 75 - -
Cca01g00396 100 CDD SANT 15 58 IPR001005 -
Cca01g00396 100 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 81 IPR044636 GO:0003700
Cca01g00396 100 ProSiteProfiles Myb-like domain profile. 16 62 IPR001005 -
Cca01g00396 100 ProSiteProfiles SANT domain profile. 11 58 IPR017884 -
Cca01g00396 100 MobiDBLite consensus disorder prediction 85 100 - -
Cca01g00396 100 SMART sant 12 64 IPR001005 -
Cca01g00396 100 PANTHER PROTEIN RADIALIS-LIKE 3 1 81 - -
Cca01g00396 100 MobiDBLite consensus disorder prediction 70 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00396 Cca-Chr1 4612148 4614157 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca01g00396 Myb_DNA-binding 2.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00396 - - gmx:100785957 151.754