Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00393 ATGGCCAAAACCAAAACATTTGTGCTTTTACCTCTCTCTGTTTTGATCCTTGCTCTGGCTACAAACCCTGTTAAATCTGAGCAACAAGAGCTATTCTTCAACGGGTTTGGTGACGGTTCCGCAAACATAACCTTAAACGGAGGAGCAGTGATTGAACACAAGGGCTTACTCCGGTTGACAAACGAGACTCGGAGAGTAATCGGGCACGCGTTTTATCCAACCCCAATTCAGTTCAAGCCCAAAAACTCCTCCGAAGCTTTCTCCTTCTCCACCGCTTTCGCGTTTGCGATCGTCCCTCAGTACCCGAAACTCGGTGGCCACGGCTTCGCCTTCACCATTTCGCGCTCCACATCGCTCGCGGACGCGTACCCCAGCCAGTACCTGGGCCTCCTCAACCCAAGCGATGTGGGGAACTTCTCAAACCACCTTTTCGCAGTGGAATTCGACACCGTCCAAGACTTCGAGTTCGGGGACATCAACGACAACCACGTCGGCATCAACCTCAACAACATGGTCTCCAACAAATCCGTGGAAGCGGCGTTTTACCCCAACAACGGCTCCACCAACAAGCAAAGCCTCAATTTGAAGAGTGGTGAAGTAACTCAAGCATGGGTCGATTACGATTCATCAAAACACCAATTGGAAGTTAGACTCTCCCCAACTTCCTCCAAACCCACTTCACCAATCTTGTCATACAAAGTAGACCTCTCACCGATTCTCCAAGATTCCATAAAGATGAGAAACTCGGAAGTGATCGAAGCTTGGGAAATGGATATTGGTCCACACAGATTCCCATACAAAGAGCTAGACAAAGCGACGAAAGGGTTCAAGGACAAGAACCTGCTCGGGTTCGGTGGGTTCGGGCGTGTGTACAAAGGGGTGCTCCCGAAGTCCCACATCGAAGTCGCGGTGAAGCGAGTATCGCACGAGTCGACACAAGGCATGCAAGAGTTCGTGTCGGAGATTTCAACCATAGGAAGGCTTCGACATAGGAACCTAGTACAGTTACTGGGTTGGTGTCGGAAGCAAAACGAACTTTTACTAGTGTACGATTTCATGCGAAACGGAAGCTTAGACAAGTACCTATTCGATGAACCGAGGGTGATTTTAACGTGGGAGCAGAGGTTTAGGATAATAAAAGGCGTGGCTTGGGGGTTGGTTTACTTGCACGAGGAGTGGGAGCAAACGGTGATTCACAGAGACGTTAAAGCAGGGAACGTATTGTTGGACGGAGAAATGAACGGAAGGTTGGGGGATTTTGGGTTGGCGAAGCTTTACGAGCACGGTTCCAACCCTAGCACGACCAGGGTGGTGGGGACGTTGGGTTACCTTGCGCCGGAGCTCACGCGGACGGGGAAGCCCACGGCGAGTTCCGACGTGTTTGCGTTCGGGGCGCTCATGCTGGAGGTGGCGTGCGGGCGGAGGCCGATTGAGGCCAAggcgttgccggaggagctcgtgctggtggagtgggtgtgggagcggtggcgcgtgggggcggcgctggcggtggtggATTCGCGCCTGGGAGGGGTGTTTGATGAGGTGGAGGCTCTGCTGGTGCTAAGGCTGGGGTTGCTGTGTTCCGTGGAGGCGCCGGAGAAGAGGCCGAGCATGCGGCAGGTGGTGAGGTACCTGGAGGGGGAGGTGGCGCCGCCTCCGGTGGTGGTGGAGGGGAAGAGAGGCGGTGGGGAATTGGCGCATTCGTATTCCTTTTGCGACAGGGCGAATACGTGGTCGTCGGCGGGTGATGACGTGTCCTCTTTATCGCTTTCCGGTGGCCGGTAG 1788 0.5123 MAKTKTFVLLPLSVLILALATNPVKSEQQELFFNGFGDGSANITLNGGAVIEHKGLLRLTNETRRVIGHAFYPTPIQFKPKNSSEAFSFSTAFAFAIVPQYPKLGGHGFAFTISRSTSLADAYPSQYLGLLNPSDVGNFSNHLFAVEFDTVQDFEFGDINDNHVGINLNNMVSNKSVEAAFYPNNGSTNKQSLNLKSGEVTQAWVDYDSSKHQLEVRLSPTSSKPTSPILSYKVDLSPILQDSIKMRNSEVIEAWEMDIGPHRFPYKELDKATKGFKDKNLLGFGGFGRVYKGVLPKSHIEVAVKRVSHESTQGMQEFVSEISTIGRLRHRNLVQLLGWCRKQNELLLVYDFMRNGSLDKYLFDEPRVILTWEQRFRIIKGVAWGLVYLHEEWEQTVIHRDVKAGNVLLDGEMNGRLGDFGLAKLYEHGSNPSTTRVVGTLGYLAPELTRTGKPTASSDVFAFGALMLEVACGRRPIEAKALPEELVLVEWVWERWRVGAALAVVDSRLGGVFDEVEALLVLRLGLLCSVEAPEKRPSMRQVVRYLEGEVAPPPVVVEGKRGGGELAHSYSFCDRANTWSSAGDDVSSLSLSGGR 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00393 595 ProSiteProfiles Protein kinase domain profile. 276 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00393 595 Gene3D Phosphorylase Kinase; domain 1 261 352 - -
Cca01g00393 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 397 409 IPR008271 GO:0004672|GO:0006468
Cca01g00393 595 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 243 IPR013320 -
Cca01g00393 595 Pfam Protein kinase domain 276 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00393 595 SUPERFAMILY Protein kinase-like (PK-like) 257 554 IPR011009 -
Cca01g00393 595 Pfam Legume lectin domain 31 242 IPR001220 GO:0030246
Cca01g00393 595 SMART serkin_6 276 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00393 595 ProSitePatterns Protein kinases ATP-binding region signature. 282 305 IPR017441 GO:0005524
Cca01g00393 595 Gene3D Transferase(Phosphotransferase) domain 1 353 556 - -
Cca01g00393 595 Gene3D - 28 247 - -
Cca01g00393 595 CDD lectin_legume_LecRK_Arcelin_ConA 33 242 IPR001220 GO:0030246
Cca01g00393 595 PANTHER - 245 595 - -
Cca01g00393 595 PANTHER - 10 244 - -
Cca01g00393 595 PANTHER L-TYPE LECTIN-DOMAIN RECEPTOR KINASE IV.2-LIKE PROTEIN 245 595 - -
Cca01g00393 595 PANTHER L-TYPE LECTIN-DOMAIN RECEPTOR KINASE IV.2-LIKE PROTEIN 10 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00393 Cca-Chr1 4597333 4599333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00393 245 556 Receptor kinase-like Gene Family AT3G55550 70.607 4.91e-160 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca01g00393 Pkinase 1.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00393 - - adu:107480854 670.233