Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00387 ATGGCCAATCGGTGGTGGACTGGGAATGTGGGAATGATAAGAGAACAAGACTTGATGGAAAAcaatagcaacaacaacacaacaaccacccccaccaatagtagcaacagcaacaataacgccaacaccaacaccaCCGAGGAAGAGGTCAGCAGGGACAACGGAGACGACCAGAACCTCGGAACCCACGAAGCTTCGGAACCGGGGAGCAGCGGTCGGAGGCCACGTGGCAGGCCTCCGGGCTCCAAGAACAAGCCCAAGCCACCGATCGTCATAACCAAGGAGAGCCCCAACGCGCTGCGGAGCCACGTCCTGGAAATCGGCAGCGGCAGCGACGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGCCACGTCCTGGAAATCGGCAGCGGCAGCGACGTCGCCGAGACCATCGCCGCCTTTGCCAACCGCCGCCACCGCGGTGTCTCGGTGCTCAGCGGCAGCGGCATTGTCACCAACGTCACGCTCCGCCAGCCCGCCGCACCCGCCGGCGTCATCACGCTGCACGGCAGGTTCGAGATTCTCTCCCTCTCCGGCGCCTTTCTGCCCTCCCCCTCTCCGCCCGGCGCCACCGGCCTCACCGTGTACCTGGCCGGCGGCCAGGGGCAGGTCGTCGGCGGCGCCGTCGCGGGCTCCCTTTTGGCCTCCGGTCCCGTCATGGTCATCGCCGCCACTTTTGCTAATGCCACTTATGAGAGGCTGCCGCTAGAGGAGGAACAAGGTGAGGAAGAAATGCAAGTGcaacaacaacaacaaccacaacaaTCTCAGGGCTTGGGTGAACAGGTTTCAATGCCTATGTATAATTTGCCTCCTAATTTGCTACACAATGGTCAGAATATGCCTCATGATGTGTTCTGGGGAGctccacctcgtcctcctcctccttctTTCTAA 1032 0.4651 MANRWWTGNVGMIREQDLMENNSNNNTTTTPTNSSNSNNNANTNTTEEEVSRDNGDDQNLGTHEASEPGSSGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEIGSGSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHVLEIGSGSDVAETIAAFANRRHRGVSVLSGSGIVTNVTLRQPAAPAGVITLHGRFEILSLSGAFLPSPSPPGATGLTVYLAGGQGQVVGGAVAGSLLASGPVMVIAATFANATYERLPLEEEQGEEEMQVQQQQQPQQSQGLGEQVSMPMYNLPPNLLHNGQNMPHDVFWGAPPRPPPPSF 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00387 343 ProSiteProfiles PPC domain profile profile. 110 293 IPR005175 -
Cca01g00387 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 22 112 - -
Cca01g00387 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 160 338 - -
Cca01g00387 343 CDD DUF296 162 242 IPR005175 -
Cca01g00387 343 MobiDBLite consensus disorder prediction 16 48 - -
Cca01g00387 343 MobiDBLite consensus disorder prediction 290 308 - -
Cca01g00387 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 160 284 - -
Cca01g00387 343 MobiDBLite consensus disorder prediction 279 343 - -
Cca01g00387 343 Gene3D - 160 300 - -
Cca01g00387 343 MobiDBLite consensus disorder prediction 1 97 - -
Cca01g00387 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 161 272 IPR005175 -
Cca01g00387 343 PIRSF ESCAROLA 156 342 IPR014476 GO:0003680
Cca01g00387 343 PIRSF ESCAROLA 11 115 IPR014476 GO:0003680
Cca01g00387 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 22 112 IPR014476 GO:0003680
Cca01g00387 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 160 338 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00387 Cca-Chr1 4518764 4519795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00387 161 343 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 60.825 3.75e-58 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00387 - - gmx:102667174 283.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00387 01 4518764 4519795 Cca05g01511 05 34188876 34190105 PCT