Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00384 ATGGAGGAGTCTCAGTACTTGATGTGGATCAAGAGAAAACAAATCCTGAAGTCACATATTCAGCAACCATTTGGAGCCAGCAACAACTCTTCATGGGAGGAAAGGGCTTTTGCAGAAGATGCTGCTAGGATACTTGGAGGGTGCATATGGCCTCCAAGATCTTACTCATGTAATTTCTGTAAGAGAGAGTTTAGGTCTGCTCAGGCTCTAGGGGGCCACATGAATGTGCACAGGAGGGACAGGGCTAGACTCAAACAAAGTCTTAGTCCCCGTAATGAACATCATCACAAAAATGATTGTACAAATTCAACAAGCAAAGTCTCATCTTCTAGGCCTTCAACTATATCCACCCAAGAAAATTGTTATCAGCCTACCATGTCTGCTTCAATTAACTGGGGATATCATGTGGGGTCTCCTGATTCAGAACCAAAAAGGTCAGTGAATATTGCAAGGGAAGAAGCTTTAAAAGGTTTGGGTTGTAATGATTATGTTGAAACAAGTTTGTCTGTGGGACAAAGTTCGGTGTTTGGCCAAAAGTTACCAATTACTTCATGTGAGGACGAAGGCATCTGTTACAAAAGATCAAAGACTTCTATACCTTCTTTGCCTGTCTTCCTCAAGCCATGCTCAAATGATAGACACCGAACTTTTCAGTCTGCAGAATTTGTACTTGGACTTAAGCCGGGAATGGAAGACTTAGATCTTGAACTCAGGCTGGGGAAGCCACAGAAAGTTAATTAG 741 0.4238 MEESQYLMWIKRKQILKSHIQQPFGASNNSSWEERAFAEDAARILGGCIWPPRSYSCNFCKREFRSAQALGGHMNVHRRDRARLKQSLSPRNEHHHKNDCTNSTSKVSSSRPSTISTQENCYQPTMSASINWGYHVGSPDSEPKRSVNIAREEALKGLGCNDYVETSLSVGQSSVFGQKLPITSCEDEGICYKRSKTSIPSLPVFLKPCSNDRHRTFQSAEFVLGLKPGMEDLDLELRLGKPQKVN 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00384 246 MobiDBLite consensus disorder prediction 86 118 - -
Cca01g00384 246 SMART c2h2final6 55 77 IPR013087 -
Cca01g00384 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Cca01g00384 246 MobiDBLite consensus disorder prediction 86 101 - -
Cca01g00384 246 PANTHER OS07G0101800 PROTEIN 1 245 - -
Cca01g00384 246 MobiDBLite consensus disorder prediction 102 118 - -
Cca01g00384 246 Gene3D Classic Zinc Finger 52 123 - -
Cca01g00384 246 Pfam C2H2-type zinc finger 55 79 - -
Cca01g00384 246 SUPERFAMILY beta-beta-alpha zinc fingers 52 82 IPR036236 -
Cca01g00384 246 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Cca01g00384 246 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00384 Cca-Chr1 4480908 4481936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00384 23 121 C2H2 Transcription Factor Family AT2G37740 51.786 2.12e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca01g00384 zf-C2H2_6 1.9e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00384 - - gmx:102663477 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00384 01 4480908 4481936 Cca05g01518 05 34256432 34257516 PCT