Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00373 ATGGCTGGAATTTGCTGCACTGTTGTCGGGGAAGGTGACGCTACTGCTCCTCTCGATTCCACCTCACGCCGCCGAAGCTTGGACCTCCTGCCCTTGAAATACATCGCTGACATGGCAGTGCCGCCGCCGCCGCCAGAGGGCTCCTGCAAACGTCCCAAGCTTCATATCACTGATTGcgaggacgacccagagaccgaggaatccgaccaagacgacgtcagcgacgacgacgaccacgacgaAGTCGCTCCCCAAACCAAAACTGCAAAAACCGCCAAGCTTGAAGAAGAACTCGAGGACTCTCCCAAGTTCGGCGTCACCTCCGTCTGCGGCAGGAGAAGAGACATGGAGGATTCCGTTTGCGTCCAGCCTTCCTTCACGACCCACGGATTCCACTACTTCGGCGTCTTCGACGGCCACGGCTGCTCTCACGTTGCGATGATGTGCAAGGAGAGGCTTCATGAGATTGTGAACGAGGAGATTCGCAGCGGGAGCGACAGTTTTACTTGGAAATCGATGATGGAGAACGGTTTCGCTCGCATGGACGACGAGGTTCATCGCCGCAGCCGGAGCGAGCACACCTACGCTTGCCGCTGCGAGCTTCGTACTCCTCACTGCGACGCCGTCGGATCCACCGCGGTGATCGCTGTCATCACGCGGGACAGAATCGTTGTCTCCAACTGCGGCGACTCCCGCGCTGTCCTCTGCCGCAGCGGCTTCGCCATCCCTCTCTCCTGCGATCACAAGCCGGATCGCCCCGATGAGTTGCTCCGAGTCCAAGCCAGGGGAGGGCGCGTGATCTACTGGGACGGCCCAAGAGTGCTTGGAGTGTTGGCCATGTCACGTGCCATAGGTGACAATTATCTGAAGCCGTTCGTGATTTCTGAGCCGGAGGTGACGGTGACGGAACGgagtgatgaggatgagtgtttgattctggcgagtgatgggttatgggatgtagtgTCCAATGAGACCGCTTGTGGGGTTGTGAGGATGTGCCTTAGGGCGCAGAAGCAGAAGCAGAAGCTGCCGTCGCCACCCCCGTCTCCGGGGAGTGACGTCACGGCAGATGGGTCCGACCGGGCTTGCTCCGATGCGTCGATTCTGTTGACCAAGTTGGCATTGGCCAGGCACAGTGCGGATAATGTGAGCGTGGTGGTGATTGATTTGAGGAAAGAAGGAGGTCAATCATccagggccagtgccagggctagttccagcgctagtgctagcgctaacgccagcgccGTTAATTAG 1260 0.5024 MAGICCTVVGEGDATAPLDSTSRRRSLDLLPLKYIADMAVPPPPPEGSCKRPKLHITDCEDDPETEESDQDDVSDDDDHDEVAPQTKTAKTAKLEEELEDSPKFGVTSVCGRRRDMEDSVCVQPSFTTHGFHYFGVFDGHGCSHVAMMCKERLHEIVNEEIRSGSDSFTWKSMMENGFARMDDEVHRRSRSEHTYACRCELRTPHCDAVGSTAVIAVITRDRIVVSNCGDSRAVLCRSGFAIPLSCDHKPDRPDELLRVQARGGRVIYWDGPRVLGVLAMSRAIGDNYLKPFVISEPEVTVTERSDEDECLILASDGLWDVVSNETACGVVRMCLRAQKQKQKLPSPPPSPGSDVTADGSDRACSDASILLTKLALARHSADNVSVVVIDLRKEGGQSSRASARASSSASASANASAVN 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00373 419 CDD PP2Cc 103 391 IPR001932 -
Cca01g00373 419 MobiDBLite consensus disorder prediction 395 419 - -
Cca01g00373 419 SMART PP2C_4 91 389 IPR001932 -
Cca01g00373 419 PANTHER PROTEIN PHOSPHATASE 2C 37 44 394 - -
Cca01g00373 419 SUPERFAMILY PP2C-like 102 392 IPR036457 -
Cca01g00373 419 MobiDBLite consensus disorder prediction 80 99 - -
Cca01g00373 419 PANTHER ALPHABET, ISOFORM E-RELATED 44 394 - -
Cca01g00373 419 MobiDBLite consensus disorder prediction 61 79 - -
Cca01g00373 419 MobiDBLite consensus disorder prediction 339 360 - -
Cca01g00373 419 ProSiteProfiles PPM-type phosphatase domain profile. 103 391 IPR001932 -
Cca01g00373 419 MobiDBLite consensus disorder prediction 399 419 - -
Cca01g00373 419 ProSitePatterns PPM-type phosphatase domain signature. 133 141 IPR000222 GO:0043169
Cca01g00373 419 MobiDBLite consensus disorder prediction 38 99 - -
Cca01g00373 419 Gene3D - 91 399 IPR036457 -
Cca01g00373 419 Pfam Protein phosphatase 2C 104 343 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00373 Cca-Chr1 4306528 4308939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00373 1 393 PP2C-type Phosphatase Gene Family AT3G11410 57.457 1.60e-135 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00373 K14497 - gmx:100796161 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00373 01 4306528 4308939 Cca05g01519 05 34272558 34274959 PCT