Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00364 ATGAAGACGCAGTACAACCGAATGGGTTCCATGGCGAGGCTCATCCTCTTGCTGACACCCCTGGTTCTCCTGCTCTCACGCGCGACTCACGTGAGGTCATGGAGCCCATGCCCACCCTGCGGCAACACGACGGTGCCGTTCCCCCTGAGCACCACCCCCTCGTGCGGCGACCCCTCCTACAAAATAAGGTgcagcagcagcagcagcaacagcCTCCTCTTCGACACGCTCAACAACTCCTACCCCATCCTCTCCATCAACGCCAAAGCCCAACGCCTCGTCATCCAGCCCGCACCCTTCCTCTCCAACACCTGCGTCACCACCGACAAAGCCCACCAGGGGATCCAGCTCAACAACACCCTCCCCTTCAACATCACCAGCTCCAACACCATCGTCTACCTCAACTGCACCACCTCGCTCCTCCAGTCCCCCCTCAACTGctccgccgccagcgcctgccaccgctacatcaacgccaccgcctccgcctccgcctgctcccacgcccccctctgctgcacctaccgcACCGGCGGCTCTAGCAACTCCTACGGGATTCGCGTGAGGGACTCTGGCTGTAGTGCTTACTCTAGTTTTGTTAACCTGGACTCGGGTCTTCCCGTCAACCGCTGGCCCCAACCGGGCTTGGAGATTCAGTGGTTGTCGCCCAGGGAAACTGTGTGTGGGTCCCAGGGGGATTGTGACTCTGCCACCTCCACTTGTGGGCCCGATGCTTCTTCCGGAAGTGGGATCAAGAGGTGCTTCTGTAACCATGGGCTCGTCTGGGACCCTATTCAGGGGCTCTGTGCTAAAAAGATTACTTGCCAGAATCCCGATGGTTGTGACCACTCAACCAACACAACCGCCATAATAGCAGGTTCAGTATGCGGGGTTGGAGCTGCAGTTATCCTGGCGACGATCGCCATTCTCCTCTACAAACGGCAGAAGCGCATGAAAGAAGCACAAGCACGGTTAGCCAAGGAGCGCGAAGGAATTCTGAACGCCAGTGGCGGTGGCAGAGCCGCCAAACTTTTCAGCGGCAGAGATATAAAGAAAGCCACTAACGACTTCTCCAGCGACAGGCTTCtcggcgtcggaggctacggcgaagtctacaagggcactctccaagacggcactgtcgtggccgtcaaatgcgccaagcttggcaaccccaaaggcaccgaccaagtcctcaacgaggttcgcatattgtgccaagtcaaccaccgcaacctcgttggtctacttggttgctgtgtcgaactagagcaacctattttggtctatgagtttatagaaaatggtacccttcttgatcatttgcaagatcaaatgtcaaagggacgtgcttttctcacttggactcatcgccttcaaattgcacgtcacactgctgaggctcttgcttaccttcacttcatggctgtgcctcctatctaccacagagatgtcaagtccagcaacattctccttgacaacaagatgagtgccaaggtttccgattttggcttgtctaggttggctcaaacggatatgagtcatatctctacttgtgctcagggcacccttggttaccttgaccctgagtattataggaactatcagttgactgataagagtgatgtttatagttttggggtggtgctgcttgagcttttgACGGCTCAGAAGGCTATAGATTTTCATAGGGCACCGGATGATGTCAACTTGGCGGTTTATGTGCATAGAATTGTGGCCGAGGAGAAGTTGATGGATATTATTGATCCAATGTTGAAGAATGGAGCTACCACTATTGAGTTAGAAACTATGAAGGCCGTGGCTTTTCTGGCTTTGGGGTGCTTGGAGGAGAGGAGACAGAACCGGCCTTCCATGAAAGAGGTAGCAGAGGAGATTGAGTATATCATTAGTATTGCCTCTGCAAAGGTAGTGGAGAAGTAG 1941 0.3545 MKTQYNRMGSMARLILLLTPLVLLLSRATHVRSWSPCPPCGNTTVPFPLSTTPSCGDPSYKIRCSSSSSNSLLFDTLNNSYPILSINAKAQRLVIQPAPFLSNTCVTTDKAHQGIQLNNTLPFNITSSNTIVYLNCTTSLLQSPLNCSAASACHRYINATASASACSHAPLCCTYRTGGSSNSYGIRVRDSGCSAYSSFVNLDSGLPVNRWPQPGLEIQWLSPRETVCGSQGDCDSATSTCGPDASSGSGIKRCFCNHGLVWDPIQGLCAKKITCQNPDGCDHSTNTTAIIAGSVCGVGAAVILATIAILLYKRQKRMKEAQARLAKEREGILNASGGGRAAKLFSGRDIKKATNDFSSDRLLGVGGYGEVYKGTLQDGTVVAVKCAKLGNPKGTDQVLNEVRILCQVNHRNLVGLLGCCVELEQPILVYEFIENGTLLDHLQDQMSKGRAFLTWTHRLQIARHTAEALAYLHFMAVPPIYHRDVKSSNILLDNKMSAKVSDFGLSRLAQTDMSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTAQKAIDFHRAPDDVNLAVYVHRIVAEEKLMDIIDPMLKNGATTIELETMKAVAFLALGCLEERRQNRPSMKEVAEEIEYIISIASAKVVEK 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00364 646 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524
Cca01g00364 646 CDD STKc_IRAK 363 633 - -
Cca01g00364 646 SUPERFAMILY Protein kinase-like (PK-like) 342 632 IPR011009 -
Cca01g00364 646 Gene3D Phosphorylase Kinase; domain 1 317 432 - -
Cca01g00364 646 PANTHER OS05G0318100 PROTEIN 27 641 - -
Cca01g00364 646 Pfam Protein tyrosine and serine/threonine kinase 360 631 IPR001245 GO:0004672|GO:0006468
Cca01g00364 646 Gene3D Transferase(Phosphotransferase) domain 1 433 644 - -
Cca01g00364 646 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 27 641 IPR045274 GO:0007166
Cca01g00364 646 Pfam Wall-associated receptor kinase galacturonan-binding 37 95 IPR025287 GO:0030247
Cca01g00364 646 ProSiteProfiles Protein kinase domain profile. 357 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00364 646 SMART serkin_6 357 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00364 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00364 Cca-Chr1 4169082 4172090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00364 28 645 Receptor kinase-like Gene Family AT5G02070 52.351 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Cca01g00364 PK_Tyr_Ser-Thr 2.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00364 - - gmx:100305415 1094.34