Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00358 ATGTCTCCTCCCCAAGATATCAATCATCTCTCTCACCCTTGTATATACGGGGACTTTGTTTCTTCATACTCAGAGAGAAAATCTGGTTTTATGAAATGGTTTGGCAAGATATTCAAAATTGGGTCCAGTAGAGGAAGGGGCGGTGGTCATCATCTAGAACAGCCTGTGGAGGAAAACATGGTTTGGCCAGCTCCAGCTAGATCGTTGGATGACCGTGCTAGATCTCGGAAGGAGAAAGAGGATCTGGACCGTGCAATTGCACTTTCTTTAGGCGAAGATTTAAAGAGACCAACTGGATATAGATGGCGGACAGGAACTGATGAAGATTATGCAAAGGCTCTTCAGGATCGCATGTTCTCATCAACGCATCCTCCATATACCCCTTTACCTTTTTATCCCCGGGGATATGGTAGTATGCCATCGCATAACAGAATATGTGAAGGGTGCAACCGAGAGATACTTTATGGCAATTGTTTAGGAGTTGGTCACAGTTATTTTCATCCAGAATGCTTTCGGTGTCACTCTTGTCGTTACCCCATTACTGAGCGCGAGTTTTCTTTGTCAGGGAAGCGTCAATATCACAAGTCCTGTTTTAAAGAATTAACCCACCCTAAATGTGAAGTTTGCCATCAATATATACCAATAAATGCTGCTGGTTTGATTGAGTATAGATGCCACCCTTATTGGAACCAAAAGTATTGTCCATGTCATGAATATGATAACACAGCTCGGTGCTGTAGTTGTGAAAGATTAGAGTCTCGGGATGAAAGATACTACAGATTGGAAGATGGACGCATTTTGTGCTTTGAGTGCATGGAATCTGCTATAACAGACACTGGAGAATGCCAACCCCTTTATCATTCTATCAGAGACTACTATGAAGGAATGAACATGAAAATAGATCAACAAGTCCCAATGCTTCTCGTTGGGAGAGAAGCACTTAATGAAGCCATTGTTGGGGAGAAGAATGGTTTCCATCACTTACCAGAAACAAGGGGCTTATGTCTTTCAGAAGAGAAAACTGTTGCAAGTGTATATAGATGGCCAAGGTTTGGAGGCCATCGATTAACAGGGATGAGATGTCAACATCAAAAGCTGACTAGAAAATGTGATGTTACAGCTATTCTTGTTCTCTATGGCCTTCCAAGATTACTTACAGGTGCTATACTTGCCCATGAGTTGATGCATGCTTGGTTACGCCTTAAAGGTTACCAAAACCTGAGTCCTGAAGTAGAGGAAGGTATTTGTCAGGTTCTTTCTTACATGTGGCTTGATGCAGAGGTTATGTCGGGTTCTAGAAGCATGCCATCAACATCAGCATCAGCATCAGCTTCTTCTTCAAAGAAAGGTGCAAAATCTCATGTTGAAAGTAAATTGGGTGAGTTTTTCAAGAACCAGATTGCCAATGATTCTTCCCCAACTTATGGTGGTGGCTTTAGAGCAGCTAGTAAAGCTGTGGAAAAATATGGTTTAACTATTACTCTGGATCATATTCGTTATACTGGCCAGTTTCCATTGTAA 1521 0.4188 MSPPQDINHLSHPCIYGDFVSSYSERKSGFMKWFGKIFKIGSSRGRGGGHHLEQPVEENMVWPAPARSLDDRARSRKEKEDLDRAIALSLGEDLKRPTGYRWRTGTDEDYAKALQDRMFSSTHPPYTPLPFYPRGYGSMPSHNRICEGCNREILYGNCLGVGHSYFHPECFRCHSCRYPITEREFSLSGKRQYHKSCFKELTHPKCEVCHQYIPINAAGLIEYRCHPYWNQKYCPCHEYDNTARCCSCERLESRDERYYRLEDGRILCFECMESAITDTGECQPLYHSIRDYYEGMNMKIDQQVPMLLVGREALNEAIVGEKNGFHHLPETRGLCLSEEKTVASVYRWPRFGGHRLTGMRCQHQKLTRKCDVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYQNLSPEVEEGICQVLSYMWLDAEVMSGSRSMPSTSASASASSSKKGAKSHVESKLGEFFKNQIANDSSPTYGGGFRAASKAVEKYGLTITLDHIRYTGQFPL 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00358 506 SMART lim_4 145 197 IPR001781 -
Cca01g00358 506 ProSitePatterns LIM zinc-binding domain signature. 146 180 IPR001781 -
Cca01g00358 506 Gene3D Cysteine Rich Protein 141 204 - -
Cca01g00358 506 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 20 506 - -
Cca01g00358 506 Pfam LIM domain 146 199 IPR001781 -
Cca01g00358 506 Pfam Protein DA1 295 500 IPR022087 -
Cca01g00358 506 CDD LIM_DA1 146 198 - -
Cca01g00358 506 ProSiteProfiles LIM domain profile. 144 204 IPR001781 -
Cca01g00358 506 PANTHER PROTEIN DA1-RELATED 2 20 506 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00358 Cca-Chr1 4129758 4136717 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca01g00358 DA1-like 3.2e-93 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00358 - - gmx:100798829 932.169