Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00353 ATGGATACTTGCATATCATCCTTTTCTCATTTTCTGCTACTTCTTTGCTTTACTTCATTTCTTCAAATATGTTGCTCAGCATCCCAACTGAAGAGTTACATTATCTACACTGGCAATAGCATGAAGGATGAAGCTTCTGCGTTGACACTTTACTCAAATATACTACAAGAAGTTGCAGAGAGCAAAGCTGAGACCAAATCGATAGAGTACCACTACAAACGCAGTTTTGGTGGCTTTGTTGCAAAGCTGACGGAGGAGGAAGCCAATAGAATGGCTAGACATGATAGAGTGGTATCAGTCTTTCCTAATGGAAAGAAGAAACTCCATACAACAAGGTCATGGGATTTTATTGGCTTTCCTCTACAAGCAGAAAGAGCAGCAGCTGAAAGTGACATCATCATTGGAGTACTTGACTCTGGAATCTGGCCAGAATCTGACAGCTTCAATGACAAAGGATTCGGTCCACCACCTAGCAAATGGAAGGGCACTTGCCAAACTAAAAATTTCACATGCAATAATAAAGTCATTGGGGCTAAGTATTACAAAGCTGATGGATTTTTTAGCGATGATGATCCAAAATCTGCAAGAGATGTAGATGGTCATGGAACTCATACAGCATCGACAGCAGCTGGGAACCAAGTTAGCACAGCTAGCATGTTAGGCCTTGCACAGGGAACAGCAAGAGGTGGCGCGATAAAAGCACGCATTGCTGTGTATAAAGTGTGTTGGTATGATACTGGTTGCGCCGATGCAGACGTACTTGCTGCATTTGATGATGCAATAGCAGATGGGGTTGACATAATATCAGTTTCTCTTGGAGGTAACCTCAGCAGGAAACAATNNNNNNNNNNNNNNNNNNNNNNNCTAACCTCAGCAGGAAACAATGGTCCAAGACCTTCCTCCTTATCGAATTTTTTGCCTTGGTCAATTACTGTGGCTGCTAGTACCATAGACAGGAAGTTTGTTACCAAGGTTGAATTAGGTAACAACAATTCCTATGAGGGTATCTCAATAAATACATTTGACCTCAAGGGAAAATTGTATCCTATAATTTATGGTGGAGACGCACCAAACAAAGACTACGATGGATCGGAGTCAAGGTTTTGCTTCAGCGGCTCGTTGGACAAAAAATTAGTTCAGGGTAAAATTGTTCTCTGCGAGAGCAGAAGCAAAGCGATAGGCCCTTTTGATGCTGGTGCTGTTGGGGCATTGGTACAAGGTCAAAATTATAGAGATAGTCCTTCAACTCTTCCATTGGCTGGATCTTACCTAGGATTGCAGGATGGTGCCACTGTATATGACTACATAAACTCTACAAGGACTCCAACTGCAACCATATTTAAGAGTGATGAGATAAAAGATACAGTAGCCCCTGTTGTGGCCTCTTTCTCTTCAAGGGGTCCAAGCCTTGTTACACCTGAAATTCTCAAGCCGGATTTAGTGGCTCCTGGAGTTGCCATTCTTGCTAGTTGGTCTCCAGTTTCTCCTCCTTCTGATGTTGACGGTGACAACAGAACATTAAATTTCAATATTATCTCCGGAACTTCAATGGCTTGTCCACATGTTTCTGGGGCAGCAGCATATGTTAAATCATTTCATCCAACATGGTCTCCTGCTGCTATTCGTTCAGCTCTAATGACAACAGCTAAACAACTTATTCCCTCGGAAAACTTTCAAGCAGAATTCGCATATGGTGCAGGCCAAATTGATCCCTCCAAGGCTGTGTTCCCCGGTTTAGTATATGATGCTGGTGAAATAGACTATGTAAGGCTTTTGTGTGGACAAGGCTATAGTTCAAGGACTTTACAACTCATCACAGGGGATAACAGTAGCTGCTCTGAAACAAAGTATGGTTCAGCAAGGGATCTAAACTATGCTTCATTTGCACTTTCTGTGCCACCCTCCAACTCAAGTGTAAGTGGCAGTTTTAACAGGACTGTAACAAATGTTGGGTCAGCAACGTCCACATATAAAGCTATTGTGACAGCTCCTCAAGGACTAAAAATTGAGGTGAACCCCAGTGTTCTATCATTCACTTCTCTTAACCAAAAGCAAACATTTGTGCTCACAATTGAGGGAACAATAGATGAAGCTCTACAGTCTGCTTCTTTGGTTTGGGATGGTGGTGAATTCCATGTTAGGAGCCCCATTGTTGTGTTCAGAGCAGCTTAA 2172 0.4208 MDTCISSFSHFLLLLCFTSFLQICCSASQLKSYIIYTGNSMKDEASALTLYSNILQEVAESKAETKSIEYHYKRSFGGFVAKLTEEEANRMARHDRVVSVFPNGKKKLHTTRSWDFIGFPLQAERAAAESDIIIGVLDSGIWPESDSFNDKGFGPPPSKWKGTCQTKNFTCNNKVIGAKYYKADGFFSDDDPKSARDVDGHGTHTASTAAGNQVSTASMLGLAQGTARGGAIKARIAVYKVCWYDTGCADADVLAAFDDAIADGVDIISVSLGGNLSRKQXXXXXXXXLTSAGNNGPRPSSLSNFLPWSITVAASTIDRKFVTKVELGNNNSYEGISINTFDLKGKLYPIIYGGDAPNKDYDGSESRFCFSGSLDKKLVQGKIVLCESRSKAIGPFDAGAVGALVQGQNYRDSPSTLPLAGSYLGLQDGATVYDYINSTRTPTATIFKSDEIKDTVAPVVASFSSRGPSLVTPEILKPDLVAPGVAILASWSPVSPPSDVDGDNRTLNFNIISGTSMACPHVSGAAAYVKSFHPTWSPAAIRSALMTTAKQLIPSENFQAEFAYGAGQIDPSKAVFPGLVYDAGEIDYVRLLCGQGYSSRTLQLITGDNSSCSETKYGSARDLNYASFALSVPPSNSSVSGSFNRTVTNVGSATSTYKAIVTAPQGLKIEVNPSVLSFTSLNQKQTFVLTIEGTIDEALQSASLVWDGGEFHVRSPIVVFRAA 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00353 723 Pfam Fibronectin type-III domain 622 719 IPR041469 -
Cca01g00353 723 Gene3D Peptidase S8/S53 domain 131 588 IPR036852 GO:0004252|GO:0006508
Cca01g00353 723 Gene3D - 318 453 - -
Cca01g00353 723 CDD Peptidases_S8_3 106 549 IPR034197 -
Cca01g00353 723 PANTHER PUTATIVE-RELATED 21 720 - -
Cca01g00353 723 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 21 720 IPR045051 -
Cca01g00353 723 Pfam Peptidase inhibitor I9 32 108 IPR010259 -
Cca01g00353 723 ProSiteProfiles Serine proteases, subtilase domain profile. 113 575 - -
Cca01g00353 723 CDD PA_subtilisin_like 325 446 - -
Cca01g00353 723 ProSitePatterns Serine proteases, subtilase family, serine active site. 514 524 IPR023828 -
Cca01g00353 723 PRINTS Subtilisin serine protease family (S8) signature 129 148 IPR015500 -
Cca01g00353 723 PRINTS Subtilisin serine protease family (S8) signature 513 529 IPR015500 -
Cca01g00353 723 PRINTS Subtilisin serine protease family (S8) signature 197 210 IPR015500 -
Cca01g00353 723 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 109 IPR037045 -
Cca01g00353 723 Pfam Subtilase family 130 567 IPR000209 GO:0006508|GO:0008236
Cca01g00353 723 SUPERFAMILY Subtilisin-like 108 578 IPR036852 GO:0004252|GO:0006508
Cca01g00353 723 Gene3D - 592 721 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00353 Cca-Chr1 4049884 4055251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00353 53 720 Subtilisin-like Serine Gene Family AT5G59190 48.476 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00353 - - gmx:100795826 1148.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01540 05 34566633 34570849 Cca01g00353 01 4049884 4055251 PCT