Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00336 ATGACAAGGATATTTGCGTCTTATTTTATTTCCCACATTTGTAATAAAAATCTCTTCATTTTCTCTATTTATTGGATTTTCATTAAGTTCAAAGCTTTAGATCACGACACAACACAACCGATCCACCATTCACCACTTTCTCTTCACAAGTCTCTGAAGCCGATCCAGTGCCTTGTGAATTTGGAATTGCTGGTGAATTTAGATCTAAAAGCCACAACAATGTCTTTTATCGGTACCCAGCAAAAGTGCAAGGCTTGTGAGAAAACGGTCTACCCCGTTGATCAGCTTTCTGCTGATGGCACTGCTTATCACAAAGCTTGTTTCAGATGCTCTCACTGCAAAGGAACATTGAAGCTAAGCAACTATTCCTCAATGGAGGGTGTTCTTTACTGCAAGCCACACTATGAGCAGCTCTTCAAGGAGACTGGCACTTTCAGCAAGAATTTCCAGTCACCTGCAAAGTTAGCAGATAAGACAACCCCTGAGCTGACAAGGTCCCCTAGTAAAGCTGCAAGCATGTTTTCTGGTACACAAGATAAGTGTGCTACATGTGGCAAAACTGCTTATCCATTGGAGAAGGTAACAGTGGAAGGGCAGGCCTATCACAAATCATGTTTCAAGTGTTCACATGGTGGTTGTCCCATAACCCCATCAAATTATGCAGCCCTTGAGGGAATTTTGTATTGCAAGCACCATTTCTCCCAGCTTTTTAAGGAGAAAGGGAGCTATAACCATCTTATCAATGTTAAATCACACGTCATAGTGGCCAAGCACGACCACGCCGCATTGCGCCACCTCGTTTCCACCATCCCTCGCCTCGCCAGGGCCGACGAGGTCAACACCGAGGCTGAATCGCTCGCGACGAAGCTCAAAATCGATCAGGTATCCGCACTCATCGACCGTCGCGACATTCCAGGAAGGGAGACGCCTCTCCACCTCGCAGTGCGTCCCGCGCAATGTCGTCAAGCTCATTACGGCGTCGTTTTTAAAGTACAGTCGGGACTGCCGTTAACGGCGGAGGGGAGCCCTAGTCAGTACCAAATGTCGGAAGCAGCACCGTCACCTTCACCGCTCCGAGACCTTCTGCCCCGTTTATCGACCGGAATCGCGGAGTCTCTGGCCACCGTCCCCTACACTCCGCACCGAAGCTCCAACGTCTCCGTCAAAGCCTTTCTGGAACCCCTCCTCGGAACCAGCACCACCGTCAAAGACTTTGCTCTCGCGTGCGCTCTCATTTCCTCTTCCACCTTCGATTCCTCCGGCATCCTCTCGTGGATTCCCGGCCACCTCTCCGCTCTCGCAACCTCGTCCTTCTCCGAGCTCTCCCACGCTTACCTCGTCGAGTTCGGCGACCAAAACCGCGACCTCGCTGTTCCTCCGGAGAAGAGGTTGGTGCTAGAGTTGATGCCAGAGGTTTTGCCGTTGCTGAAGGAGAGGATTAAGGAGAGTTCCATTGATAACTCTGATGAGAGCGACGTGTTCTCTGCAGCATCAGCGAGAGCTCCCGTTGGTTTCGCCATTCTCGCTGCTTTTCAGTTTAGGTGGTTTGTTACGCAGGTTGATTATCCTCATTTGGGCAAGTTGTGTGGATTGGTGATGCCTTGTGCACTGACTGCTGTTGATCATTGGTCCCCGGCAGTGAAGGGACAGGGCATGATTAGCCTTACACATGTCGGAAGAAACGTGGATGCTGCTGAGGTTGGTGGGTATGCGGATGTGATCCTGGATGCCTGCTGCCAGAACACGGCTTCTGATGATGAGATATGGCACCATGTGGTTGAGGCATCTGTAGTCCTTGTGACTCTTACTCAGAGTAGTAATCCTCGCAGTCCATGGTTTGAAAGGATGCTAAATGAGATGTTAAGTCACTTGGAGCGCCAGCCCAGAAACAAAGAGCTTGGTCTTATGCTTTTAGCTCACTTCAGGCGCATTTTTCCATTATTTTTTCAGTGGATGCATGCTGATGACGATGAGACTATTATTTTGGTTCTAAAATGTACTCATAGAATTTTGAGACTGACATGGATTAGGAACTCACCATTTGTTGCAAGATTGGTAGATGAACTTGCTCTTATGCATAAGGAGGCAGCATTAAGAACAGCTCGGGAAGAGATTAGAGCAAATATACGTCATATACTGATCCTACTTCAAGAAAGCAAAGGCCTACATTTTAAAGCGGCTTGGGACAAGCATCGATCTGATCCAGATTTGACCACTCTTGATTTGTCATTAAGTAGAAGAACTAATACCAACCTCGATACCATGCCTTCAGAGGATTGTCGTCAGCAGGGTTCAGTACCGGTTCAATGA 2310 0.4827 MTRIFASYFISHICNKNLFIFSIYWIFIKFKALDHDTTQPIHHSPLSLHKSLKPIQCLVNLELLVNLDLKATTMSFIGTQQKCKACEKTVYPVDQLSADGTAYHKACFRCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGTFSKNFQSPAKLADKTTPELTRSPSKAASMFSGTQDKCATCGKTAYPLEKVTVEGQAYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLINVKSHVIVAKHDHAALRHLVSTIPRLARADEVNTEAESLATKLKIDQVSALIDRRDIPGRETPLHLAVRPAQCRQAHYGVVFKVQSGLPLTAEGSPSQYQMSEAAPSPSPLRDLLPRLSTGIAESLATVPYTPHRSSNVSVKAFLEPLLGTSTTVKDFALACALISSSTFDSSGILSWIPGHLSALATSSFSELSHAYLVEFGDQNRDLAVPPEKRLVLELMPEVLPLLKERIKESSIDNSDESDVFSAASARAPVGFAILAAFQFRWFVTQVDYPHLGKLCGLVMPCALTAVDHWSPAVKGQGMISLTHVGRNVDAAEVGGYADVILDACCQNTASDDEIWHHVVEASVVLVTLTQSSNPRSPWFERMLNEMLSHLERQPRNKELGLMLLAHFRRIFPLFFQWMHADDDETIILVLKCTHRILRLTWIRNSPFVARLVDELALMHKEAALRTAREEIRANIRHILILLQESKGLHFKAAWDKHRSDPDLTTLDLSLSRRTNTNLDTMPSEDCRQQGSVPVQ 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00336 769 Gene3D Cysteine Rich Protein 175 245 - -
Cca01g00336 769 Gene3D Cysteine Rich Protein 77 147 - -
Cca01g00336 769 ProSiteProfiles LIM domain profile. 179 239 IPR001781 -
Cca01g00336 769 CDD LIM1_SF3 79 141 - -
Cca01g00336 769 SMART lim_4 180 232 IPR001781 -
Cca01g00336 769 SMART lim_4 82 134 IPR001781 -
Cca01g00336 769 SUPERFAMILY ARM repeat 468 691 IPR016024 -
Cca01g00336 769 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 75 108 - -
Cca01g00336 769 ProSiteProfiles LIM domain profile. 81 141 IPR001781 -
Cca01g00336 769 PANTHER OS06G0694100 PROTEIN 402 749 - -
Cca01g00336 769 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 173 206 - -
Cca01g00336 769 MobiDBLite consensus disorder prediction 749 769 - -
Cca01g00336 769 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 207 246 - -
Cca01g00336 769 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 109 149 - -
Cca01g00336 769 CDD LIM2_SF3 181 241 - -
Cca01g00336 769 Pfam LIM domain 181 236 IPR001781 -
Cca01g00336 769 Pfam LIM domain 83 138 IPR001781 -
Cca01g00336 769 ProSitePatterns LIM zinc-binding domain signature. 83 117 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00336 Cca-Chr1 3826462 3838130 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Cca01g00336 LIM 2.6e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00336 K23115 - gmx:100814295 681.789