Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca01g00327 | ATGGAGTTCGAGACTCCATATCCAACTTGTTTTATGTCATACTCAAATTGGTTTTCTGAAAAAGTCCACTGCACAGAATGGACCAGCGAAGAGAATAAGAAGTTTGAGAGTGCCCTTGCCATATATGACAAGGATACCCCAGACAGATGGCTGAGGGTTGCAGCCATGCTCCCGGGAAAAACTGTCTATGATGTGATCAAGCAGTACAGAGAATTGGAAGAAGATGTTACTGAAATAGAAGCAGGTAGGATTCCAGTTCCTGGATATCCTACCTCTTCTTTCACATTGGAGATGATTGACAACCAATGTTATGATGCATGCAGAAAGAAGCCTGCAACTGTCAGGAGTCCTGAGCAGGAGAGGAAGAAAGGGGTACCTTGGACAGAAGAGGAACACAGACGTTTTTTGATGGGACTTGTAAAGTATGGTAAAGGGGATTGGAGAAATATCTCTCGCAATTTTGTGGTGACAAAGACTCCCACCCAAGTGGCAAGCCATGCTCAAAAGTATTACATAAGGCAAAAGCTTTCTGGAGGGAAAGACAATAAAAGGAGGCCTAGTATCCATGATATCACCACTGCTAATCTAACATCAGATCAAGAGTCTCACATGCCTTCAGAGAAACAGAAGCTGACTACTATGCCAAAAGTACAAATAGAATGGATTAATGACCAAAACAATGGCTCACTTATGGTCTTCAACCCAAATTATGATATGTTCATGTCACCATCTTTCATCTCTTCCAAGGCCCTCAAGCTGAAAGAGCAGGATTTCTATGATTGTGCTTTTCATGAGACTTATGCTAAGCTTAAAAATCCGGGTTTGACGGCTTCTAGAGACTTCAACAAGGAATCTATATTCGGTATTCATGCACTCTAA | 879 | 0.4187 | MEFETPYPTCFMSYSNWFSEKVHCTEWTSEENKKFESALAIYDKDTPDRWLRVAAMLPGKTVYDVIKQYRELEEDVTEIEAGRIPVPGYPTSSFTLEMIDNQCYDACRKKPATVRSPEQERKKGVPWTEEEHRRFLMGLVKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKLSGGKDNKRRPSIHDITTANLTSDQESHMPSEKQKLTTMPKVQIEWINDQNNGSLMVFNPNYDMFMSPSFISSKALKLKEQDFYDCAFHETYAKLKNPGLTASRDFNKESIFGIHAL | 292 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca01g00327 | 292 | Pfam | Myb-like DNA-binding domain | 26 | 71 | IPR001005 | - | |
Cca01g00327 | 292 | Pfam | Myb-like DNA-binding domain | 126 | 170 | IPR001005 | - | |
Cca01g00327 | 292 | ProSiteProfiles | SANT domain profile. | 22 | 77 | IPR017884 | - | |
Cca01g00327 | 292 | CDD | SANT | 126 | 170 | IPR001005 | - | |
Cca01g00327 | 292 | SUPERFAMILY | Homeodomain-like | 120 | 175 | IPR009057 | - | |
Cca01g00327 | 292 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 122 | 174 | IPR006447 | GO:0003677 | |
Cca01g00327 | 292 | Gene3D | - | 125 | 176 | - | - | |
Cca01g00327 | 292 | ProSiteProfiles | Myb-like domain profile. | 119 | 171 | IPR001005 | - | |
Cca01g00327 | 292 | PANTHER | DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 4 | 275 | IPR043363 | - | |
Cca01g00327 | 292 | SMART | sant | 23 | 75 | IPR001005 | - | |
Cca01g00327 | 292 | SMART | sant | 123 | 173 | IPR001005 | - | |
Cca01g00327 | 292 | Gene3D | - | 19 | 86 | - | - | |
Cca01g00327 | 292 | ProSiteProfiles | SANT domain profile. | 127 | 175 | IPR017884 | - | |
Cca01g00327 | 292 | PANTHER | DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN | 4 | 275 | - | - | |
Cca01g00327 | 292 | SUPERFAMILY | Homeodomain-like | 26 | 79 | IPR009057 | - | |
Cca01g00327 | 292 | CDD | SANT | 26 | 72 | IPR001005 | - | |
Cca01g00327 | 292 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 119 | 175 | IPR017930 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca01g00327 | Cca-Chr1 | 3738098 | 3739694 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Cca01g00327 | Myb_DNA-binding | 1.1e-10 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca01g00327 | - | - | gmx:100783469 | 509.22 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca01g00327 | 01 | 3738098 | 3739694 | Cca05g01567 | 05 | 34834403 | 34836859 | PCT |