Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00327 ATGGAGTTCGAGACTCCATATCCAACTTGTTTTATGTCATACTCAAATTGGTTTTCTGAAAAAGTCCACTGCACAGAATGGACCAGCGAAGAGAATAAGAAGTTTGAGAGTGCCCTTGCCATATATGACAAGGATACCCCAGACAGATGGCTGAGGGTTGCAGCCATGCTCCCGGGAAAAACTGTCTATGATGTGATCAAGCAGTACAGAGAATTGGAAGAAGATGTTACTGAAATAGAAGCAGGTAGGATTCCAGTTCCTGGATATCCTACCTCTTCTTTCACATTGGAGATGATTGACAACCAATGTTATGATGCATGCAGAAAGAAGCCTGCAACTGTCAGGAGTCCTGAGCAGGAGAGGAAGAAAGGGGTACCTTGGACAGAAGAGGAACACAGACGTTTTTTGATGGGACTTGTAAAGTATGGTAAAGGGGATTGGAGAAATATCTCTCGCAATTTTGTGGTGACAAAGACTCCCACCCAAGTGGCAAGCCATGCTCAAAAGTATTACATAAGGCAAAAGCTTTCTGGAGGGAAAGACAATAAAAGGAGGCCTAGTATCCATGATATCACCACTGCTAATCTAACATCAGATCAAGAGTCTCACATGCCTTCAGAGAAACAGAAGCTGACTACTATGCCAAAAGTACAAATAGAATGGATTAATGACCAAAACAATGGCTCACTTATGGTCTTCAACCCAAATTATGATATGTTCATGTCACCATCTTTCATCTCTTCCAAGGCCCTCAAGCTGAAAGAGCAGGATTTCTATGATTGTGCTTTTCATGAGACTTATGCTAAGCTTAAAAATCCGGGTTTGACGGCTTCTAGAGACTTCAACAAGGAATCTATATTCGGTATTCATGCACTCTAA 879 0.4187 MEFETPYPTCFMSYSNWFSEKVHCTEWTSEENKKFESALAIYDKDTPDRWLRVAAMLPGKTVYDVIKQYRELEEDVTEIEAGRIPVPGYPTSSFTLEMIDNQCYDACRKKPATVRSPEQERKKGVPWTEEEHRRFLMGLVKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKLSGGKDNKRRPSIHDITTANLTSDQESHMPSEKQKLTTMPKVQIEWINDQNNGSLMVFNPNYDMFMSPSFISSKALKLKEQDFYDCAFHETYAKLKNPGLTASRDFNKESIFGIHAL 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00327 292 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Cca01g00327 292 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Cca01g00327 292 ProSiteProfiles SANT domain profile. 22 77 IPR017884 -
Cca01g00327 292 CDD SANT 126 170 IPR001005 -
Cca01g00327 292 SUPERFAMILY Homeodomain-like 120 175 IPR009057 -
Cca01g00327 292 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
Cca01g00327 292 Gene3D - 125 176 - -
Cca01g00327 292 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Cca01g00327 292 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 275 IPR043363 -
Cca01g00327 292 SMART sant 23 75 IPR001005 -
Cca01g00327 292 SMART sant 123 173 IPR001005 -
Cca01g00327 292 Gene3D - 19 86 - -
Cca01g00327 292 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Cca01g00327 292 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 4 275 - -
Cca01g00327 292 SUPERFAMILY Homeodomain-like 26 79 IPR009057 -
Cca01g00327 292 CDD SANT 26 72 IPR001005 -
Cca01g00327 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00327 Cca-Chr1 3738098 3739694 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca01g00327 Myb_DNA-binding 1.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00327 - - gmx:100783469 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00327 01 3738098 3739694 Cca05g01567 05 34834403 34836859 PCT