Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00321 ATGTCGGAGGCTTTGATCAATGGATTGGCTGGAGCTGGAGGAGGGATCATTGCTCAACTCATCACATACCCACTTCAAACTGTAAACACTCGTCAACAAACCGAGCGTGATCCGAAGAAAGACAACAGGAGTCAGGGGACCCTCGAAAGAATGTGCCAGGTTGTGAAAGAAGAGGGGTGGGAGCGGTTGTATGGAGGCTTGATGCCATCACTAGTGGGTACAGCTGCGTCTCAGGGTGTTTACTATTATTTCTATCAAATATTCAGGAACAAAGCCGAAGCAGCTGCACTAAACCAAAAGAAAATGGGCATCAGTGATGGATCTGTTGGGATGCTCTCCTCACTTCTTGTTGCTGCATTATCTGGGTGTGTTAACGTGCTCTTGACAAATCCCATATGGGTAGTTGTTACCAGAATGCAGACACATAGAAAAGAGTCGAATGGAACTCCATCTGATCGGGGATTGTTAGTTGCCACTGAGCCACCAATTCTTTCTGCAGTTGAGCCTCTTCCTTATGGAACTAGCCATGTGATTCAAGAAATCTTTGATGAAGCTGGAATTTGGGGTTTCTGGAAAGGTGTATTACCAACATTGATCATGGTAAGCAATCCTTCCATACAGTTCATGCTGTATGAATCCATGTTGGCGAAGTTAAGAAAAAGACGTTCTTTGAATCAGAAGGGTAGCAATGGGGTAACTGCTGTAGAGATATTTCTTCTTGGAGCTTTAGCAAAACTTGGAGCTACTGTTGTAACTTACCCGCTCCTCGTTGTTAAGGCAAGGCTCCAAGCTAGGCAGGATAAAACTGGAGACAGGAGGCACCATTATAAAGGTACATGGGATGCTATTATTAAGATGATCCGCTATGAAGGGTTTGATGGGTTTTACAAAGGTATGGGCACCAAGATTGTACAAAGTGTGCTGGCTGCTGCTGTTTTGTTCATGATGAAGGAAGAACTAGTTAGGGGGGTTCATTTCTTGCTTGGTAAGAATTCAGCCAACACTGTAAAGCCAAAGAATCTATGA 1026 0.4425 MSEALINGLAGAGGGIIAQLITYPLQTVNTRQQTERDPKKDNRSQGTLERMCQVVKEEGWERLYGGLMPSLVGTAASQGVYYYFYQIFRNKAEAAALNQKKMGISDGSVGMLSSLLVAALSGCVNVLLTNPIWVVVTRMQTHRKESNGTPSDRGLLVATEPPILSAVEPLPYGTSHVIQEIFDEAGIWGFWKGVLPTLIMVSNPSIQFMLYESMLAKLRKRRSLNQKGSNGVTAVEIFLLGALAKLGATVVTYPLLVVKARLQARQDKTGDRRHHYKGTWDAIIKMIRYEGFDGFYKGMGTKIVQSVLAAAVLFMMKEELVRGVHFLLGKNSANTVKPKNL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00321 341 ProSiteProfiles Solute carrier (Solcar) repeat profile. 2 91 IPR018108 -
Cca01g00321 341 SUPERFAMILY Mitochondrial carrier 4 319 IPR023395 -
Cca01g00321 341 MobiDBLite consensus disorder prediction 29 48 - -
Cca01g00321 341 Pfam Mitochondrial carrier protein 6 90 IPR018108 -
Cca01g00321 341 Pfam Mitochondrial carrier protein 109 220 IPR018108 -
Cca01g00321 341 Pfam Mitochondrial carrier protein 233 322 IPR018108 -
Cca01g00321 341 Gene3D Mitochondrial carrier domain 6 326 IPR023395 -
Cca01g00321 341 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 217 IPR018108 -
Cca01g00321 341 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 339 IPR044712 GO:0006862|GO:0055085
Cca01g00321 341 ProSiteProfiles Solute carrier (Solcar) repeat profile. 232 323 IPR018108 -
Cca01g00321 341 PANTHER PEROXISOMAL NICOTINAMIDE ADENINE DINUCLEOTIDE CARRIER 1 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00321 Cca-Chr1 3587611 3594917 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00321 24 322 Chloroplast and Mitochondria Gene Families AT2G47490 30.392 9.46e-30 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00321 K13354 - gmx:100775784 600.127