Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00319 ATGGCTTCCGCAGTGAGTGTGATCTCAAAATGCAGTGTAGTTCCTCACCAAAAATCCACTCTCGGAGACCTAAAACTCTCCATGTCAGACCTTAACATGCTATGCTCTCACTACATCCAGAAGGGATGCCTCTTCACAGCCCCTCAACTTCCCACCCACACTCTCATCCCTCATCTCATCCACGCCCTCTCCAAAACGCTCTCCCTCTTCCCCCCCTTCGCCGGCCGCCTCGTCACACACGCAGACGCCCACGTCTACGTCGCATGCAACGACGCCGGCGTCGACTTCATCCACGCCTCCGCCGCAGACGTCTCCGTCTCCGACCTCCTCTCCCCTCCCGACGTCAACCCTATCTTCCAGAAACTCTTCCCCTTCCACCACACAATCAGCTACGCCGCTCACTCCTCTCCCATCATGGCCGTCCAGCTCACCCAGCTCGCTGACGGCCTCTTCATCGGCTGCGCCGTCTGCCACGCCGTCACCGACGGCGCCTCCTTCTGGAACTTCTACAACACCTTCGCCAAAATCTCCCGAGGTGCCGCCACGTCTCCCTCCTCCCTCCCGGACTTCCGCCGCGACTCCATTCTCTCTTCCAAAGTCCTGCTTCAGTTGCCCAAAGACATGAAGGTGAGCTTCAACGCGGAGGAGCCGATTCGCGAGAGAATCTTCAGCTTCAAGCGAGAATCTATTCAGCAGCTGAAAGCGAGGGTGAACAGTGGCCGGAGTTTACCGGAGAACGTTGAGGCTGTTGAGGTGCTGGCCAAGTGGAGCAGCGACAAGCAGGTGAAAAGCGTTGCGCCAGATGAAACGGTGGAGATTTCGTCGTTTCAGTCGCTCTGCGCGCTGGTGTGGCGGTGCGTGACGCGTGCGAGGAATCTGGAGGGGACGAAAACGACGACGTTTAGAATGGCGGTTAACGTTCGGCAGCGGATGGAGCCCAAGTTGGGGGAGAATTACTTTGGGAACGCGATTCAGAGCATTGCCACGTATGCATCCGCGGGTGACGTGGCGTCGAGGGACCTTCGGTGGAGCGCGGAGCTGCTGAACAAAAGCGTGAGGGCGTACGACAGCGCTATGGTGCGGCGCGCCGTGGAGGATTGGGAGCGCCAGCCCAAGGTCTTTGCGTTGGGAAACAAAGACGGCGCCACCGTCCAGATGGGTAGCTCGCCGAGATTCCCGATGTACGACAACGACTTCGGCTGGGGGCGCCCGTTGGCCGTGCGGAGCGGCGGAGCCAACAAGTTCGACGGCAAGATGTCGGCCTTTCCCGGGCGGAGTGGCGGCGGCGCCGTCGATTTGGAGATGATTTTGGCGCCCGACACGATGGCGCGACTCGAAACTGATCCTGAGTTCATGTTTTACGTGTGTGGTCCATAG 1377 0.5948 MASAVSVISKCSVVPHQKSTLGDLKLSMSDLNMLCSHYIQKGCLFTAPQLPTHTLIPHLIHALSKTLSLFPPFAGRLVTHADAHVYVACNDAGVDFIHASAADVSVSDLLSPPDVNPIFQKLFPFHHTISYAAHSSPIMAVQLTQLADGLFIGCAVCHAVTDGASFWNFYNTFAKISRGAATSPSSLPDFRRDSILSSKVLLQLPKDMKVSFNAEEPIRERIFSFKRESIQQLKARVNSGRSLPENVEAVEVLAKWSSDKQVKSVAPDETVEISSFQSLCALVWRCVTRARNLEGTKTTTFRMAVNVRQRMEPKLGENYFGNAIQSIATYASAGDVASRDLRWSAELLNKSVRAYDSAMVRRAVEDWERQPKVFALGNKDGATVQMGSSPRFPMYDNDFGWGRPLAVRSGGANKFDGKMSAFPGRSGGGAVDLEMILAPDTMARLETDPEFMFYVCGP 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00319 458 Pfam Transferase family 5 452 - -
Cca01g00319 458 Gene3D - 5 208 IPR023213 -
Cca01g00319 458 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 5 456 - -
Cca01g00319 458 Gene3D - 209 447 IPR023213 -
Cca01g00319 458 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 5 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00319 Cca-Chr1 3548253 3550067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00319 29 455 Monolignol Biosynthesis Gene Families AT5G48930 28.018 1.05e-38 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00319 - - gmx:100792476 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00319 01 3548253 3550067 Cca05g01573 05 34972824 34974783 PCT