Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00318 ATGGAAGACGGCATGTCAGGCTTTTGTATTAGAGGTGCAAGTGTTGGTGGTAACAGCACTGGCACAAAGTGTGGGCGTTGGAATCCCACCACTGAACAAGTTAAGGTTCTCACTGAACTGTTCAGTTCTGGGCTCCGAACACCAAGCACTGATCAGATTCAGAAGATCTCTAATCAGCTTAGTTTTTATGGTAAGATTGAGAGCAAGAATGTGTTCTATTGGTTTCAAAACCATAAGGCTAGGGAGAGACAGAAACGTCGCAAGGTTGATAAGGGTGTGATTCGTAGAGAAAACTCTATCCCCAAGAATTCTTTTGCACAAAATTATGCTCAGGTaacggcccgttctgCTTGCtccttcaaaggcaccgtCGACGTCACCAACAGCTACGCCGTGCCCTTTGAAGAAGATGACAAGGATCCAAGCATCTGGTTTCTTGACCACAATTACCACGAATCCATGTTTTCCATGTTTAAAAGAATAAATGCAAAGGAGCATGTCGTCGGGTGGTATAGCACAGGTCCAAAACTGCGTGAAAATGACCTTGACATTCATGGCTTATTTAATGACTATGTTCCAAATCCTGTTTTGGTCATAATTGATGTTGAACCTAAGGAATTGGGAATCCCAACAAAAGCATATTATGCTGTTGAAGAGGTTAAAGAGAATGCTACTCAAAAAAGTCAAAAGGTCTTTGTGCACGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGCGACAGAGGTAAGTGCAAAACTCACAGCCTTGAAGGGTTTGGATGCAAGGCTTAAAGAGATAAGGAGTTACCTTGACCTTGTTATTGATGGAAAGCTTCCATTAAACCATGAGATCCTGTACCATCTGCAGGACGTGTTTAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGTGAAAACAAATGATATGATGCTAGTAATATACCTCTCATCTCTCATCAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAGATGCTTAACAAAGAGCATGAACGGGCAGAAGACTCAAAATCAGTTACAGTACCGAGTGCAGCTGCGTAA 1137 0.4081 MEDGMSGFCIRGASVGGNSTGTKCGRWNPTTEQVKVLTELFSSGLRTPSTDQIQKISNQLSFYGKIESKNVFYWFQNHKARERQKRRKVDKGVIRRENSIPKNSFAQNYAQVTARSACSFKGTVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHGLFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVADLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKSVTVPSAAA 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00318 378 CDD homeodomain 26 86 IPR001356 GO:0003677
Cca01g00318 378 SMART pad1_6 86 219 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cca01g00318 378 ProSiteProfiles 'Homeobox' domain profile. 20 85 IPR001356 GO:0003677
Cca01g00318 378 PANTHER 26S PROTEASOME REGULATORY PARTICLE NON-ATPASE SUBUNIT 8 117 378 - -
Cca01g00318 378 Gene3D - 23 90 - -
Cca01g00318 378 Pfam Maintenance of mitochondrial structure and function 243 354 IPR024969 -
Cca01g00318 378 Pfam Homeodomain 24 84 IPR001356 GO:0003677
Cca01g00318 378 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 123 193 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cca01g00318 378 SMART HOX_1 22 89 IPR001356 GO:0003677
Cca01g00318 378 CDD MPN_RPN7_8 119 364 IPR033858 GO:0005838
Cca01g00318 378 Gene3D Cytidine Deaminase, domain 2 118 263 - -
Cca01g00318 378 SUPERFAMILY Homeodomain-like 25 87 IPR009057 -
Cca01g00318 378 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 117 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00318 Cca-Chr1 3529988 3536273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00318 8 89 Wox Gene Family AT3G11260 76.471 1.61e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Cca01g00318 MitMem_reg 1.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00318 K03038 - gmx:100790393 514.998