Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00317 ATGGCGGCGAGCGATCGCACAGTGTTGCAGttctcttcttcttcctcttcctcttcCGCGAGCTTGTCGGCGAAGGTCCACCCTCTCGTTGTCTTCAACATCTGCGATTGTTACGTTCGACGCCCTGACCAAGCCGACCGCGTCATCGGAACCCTACTTGGCTCCGTCCTCCCCGATGGAACCGTCGATATCCGCAATTCCTATGCCGTTCCTCACAACGAGAGCATCGAGCAGGTTGCTTTGGATATAGAGTACCAGCACAATATGTTATTATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTTGGATGGTATTCAACTGGTCTTGGAGTAACTGGTGGTAGCGCATTGATCCATGAATTTTATTCTCGAGAAGTACAAAATCCCATACACTTGACAGTTGATACAGGATTTACAAATGGAGCGGGTACCATTAAAGCATATGTGTCCAACAATTTATCTCTTGGAGAGCGGCAAATTGCTGCACAGTTTCAAGAAATTCCATTAGATCTTCGTATGGTGGAAGCTGAGCGGATTGGATTTGATATGCTGAAGGCAACCGCTGTTGACAAAATTCCCTCAGATTTAGAAGGGATGGAAGCATCAATGCAGCATCTACTAGTATTGATTGATGACATCTACAAATATGTTGATGATGTTGTGGAAGGGCGAGTTCCACCAGACAACAAAATCGGTAAACATATATCAGATGCCGTAGGTTCCCTTCCCAAAGTGTCCCCATCAGTTTTTGATAAGCTTGTCAATGACAGCTTGCAGGATCACTTGCTTTTGCTATACTTATCTAGCATCACAAGAACGCAGCTTAGCTTGGCCGAAAAATTGAACACGGCTGCTCAGATTCTGTGA 870 0.4414 MAASDRTVLQFSSSSSSSSASLSAKVHPLVVFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNESIEQVALDIEYQHNMLLSHQKVNPKEIIVGWYSTGLGVTGGSALIHEFYSREVQNPIHLTVDTGFTNGAGTIKAYVSNNLSLGERQIAAQFQEIPLDLRMVEAERIGFDMLKATAVDKIPSDLEGMEASMQHLLVLIDDIYKYVDDVVEGRVPPDNKIGKHISDAVGSLPKVSPSVFDKLVNDSLQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00317 289 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 22 285 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cca01g00317 289 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 9 288 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cca01g00317 289 Gene3D Cytidine Deaminase, domain 2 10 190 - -
Cca01g00317 289 CDD MPN_eIF3f 25 282 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cca01g00317 289 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 21 128 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cca01g00317 289 ProSiteProfiles MPN domain profile. 24 155 IPR037518 -
Cca01g00317 289 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 9 288 - -
Cca01g00317 289 Pfam Maintenance of mitochondrial structure and function 176 282 IPR024969 -
Cca01g00317 289 SMART pad1_6 23 154 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00317 Cca-Chr1 3520776 3524811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00317 2 289 Eukaryotic Initiation Factors Gene Family AT2G39990 74.914 2.18e-156 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00317 K03249 - gmx:100811797 504.212