Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00315 ATGGAGGGAAAGGAGGAAGACGTGTCTTTAGGAGCCAACAAATTCCCGGAGAGGCAACCCATTGGAACCGCGGCTCAGAGCCAAGACGATGGAAAGGACTACACCGAGCCACCACCGGCTCCACTCTTCGAACCCTCCGAACTCACTTCCTGGTCCTTCTACCGAGCCGGAATCGCCGAATTCGTCGCCACTTTCCTCTTCCTCTACATAACCATCTTAACCGTCATGGGCGTCAACAGAGCCGACTCCAAGTGCGCCACCGTCGGCATCCAAGGCATCGCCTGGGCCTTCGGTGGCATGATCTTCGCCCTCGTCTACTGCACCGCCGGCATCTCAGGGGGACACATAAATCCGGCTGTGACATTTGGGCTGTTTCTGGCGAGGAAGTTGTCGTTGACTAGGGCGGTGTTCTACATAGTGATGCAGGTGCTGGGTGCTATTGTTGGTGCTGGCGTGGTCAAGGGTTTTGAGGGAAAAACCTTCTACGGCAAACACAACGGTGGTGCTAACTTTGTTGCTCCTGGTTACACCAAAGGTGATGGACTTGGCGCTGAGATTGTTGGCACCTTCATCCTTGTCTACACCGTCTTCTCAGCCACCGACGCCAAGCGTAACGCTAGAGACTCACACGTTCCTCTATTGGCACCATTGCCAATTGGGTTCGCTGTGTTCTTGGTGCACTTGGCCACCATCCCAATCACTGGAACGGGTATCAACCCTGCTCGAAGTCTCGGTGCTGCCATCATCTTCAACAAAGACCTTGGCTGGGATGATCACTGGATTTTCTGGGTTGGACCTTTCATTGGAGCAGCTCTTGCGGCTCTTTACCACCAAGTTGTAATCAGAGCCATTCCCTTCAAATCCAAGTGA 870 0.5391 MEGKEEDVSLGANKFPERQPIGTAAQSQDDGKDYTEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITILTVMGVNRADSKCATVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQVLGAIVGAGVVKGFEGKTFYGKHNGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPLLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSK 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00315 289 Gene3D Glycerol uptake facilitator protein. 40 288 IPR023271 -
Cca01g00315 289 SUPERFAMILY Aquaporin-like 47 282 IPR023271 -
Cca01g00315 289 CDD MIP 55 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g00315 289 Pfam Major intrinsic protein 47 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g00315 289 PANTHER PLASMA MEMBRANE INTRINSIC PROTEIN 1 289 - -
Cca01g00315 289 TIGRFAM MIP: MIP family channel proteins 59 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g00315 289 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Cca01g00315 289 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g00315 289 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g00315 289 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g00315 289 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g00315 289 PRINTS Major intrinsic protein family signature 220 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g00315 289 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca01g00315 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 289 IPR034294 -
Cca01g00315 289 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00315 Cca-Chr1 3507454 3509267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00315 1 289 Major Intrinsic Protein MIP AT4G23400 85.813 5.06e-172 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00315 K09872 - gmx:100791447 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00315 01 3507454 3509267 Cca05g01577 05 35016020 35018509 PCT