Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00310 ATGGATGTGATAAAGACGCAGCAAATCTCGTCGCGACCAATCGAGAAGGTGGTAGTTCACCCGCTCGTCTTGCTTAGCATCGTCGACAACTACAACAGAGTCGCCAAAGACACTCGCAAACGCGTCGTCGGCGTCTTGCTCGGTTCCTCCTTCAAAGGCACCGTCGACGTCACCAACAGCTACGCCGTGCCCTTTGAAGAAGATGACAAGGATCCAAGCATCTGGTTTCTTGACCACAATTACCACGAATCCATGTTTTCCATGTTTAAAAGAATAAATGCAAAGGAGCATGTCGTCGGGTGGTATAGCACAGGTCCAAAACTGCGTGAAAATGACCTTGACATTCATGGCTTATTTAATGACTATGTTCCAAATCCTGTTTTGGTCATAATTGATGTTGAACCTAAGGAATTGGGAATCCCAACAAAAGCATATTATGCTGTTGAAGAGGTTAAAGAGAATGCTACTCAAAAAAGTCAAAAGGTCTTTGTGCACGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGCGACAGAGGTAAGTGCAAAACTCACAGCCTTGAAGGGTTTGGATGCAAGGCTTAAAGAGATAAGGAGTTACCTTGACCTTGTTATTGATGGAAAGCTTCCATTAAACCATGAGATCCTGTACCATCTGCAGGACGTGTTTAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGTGAAAACAAATGATATGATGCTAGTAATATACCTCTCATCTCTCATCAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAGATGCTTAACAAAGAGCATGAACGGGCAGAAGACTCAAAATCAGTTACAGTACCGAGTGCAGCTGCGTAA 930 0.4344 MDVIKTQQISSRPIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHGLFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVADLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKSVTVPSAAA 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00310 309 CDD MPN_RPN7_8 15 295 IPR033858 GO:0005838
Cca01g00310 309 ProSiteProfiles MPN domain profile. 17 154 IPR037518 -
Cca01g00310 309 SMART pad1_6 16 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cca01g00310 309 Gene3D Cytidine Deaminase, domain 2 9 194 - -
Cca01g00310 309 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 7 1 308 - -
Cca01g00310 309 Pfam Maintenance of mitochondrial structure and function 174 285 IPR024969 -
Cca01g00310 309 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 15 124 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cca01g00310 309 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 1 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00310 Cca-Chr1 3396332 3400184 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00310 19 248 Eukaryotic Initiation Factors Gene Family AT2G39990 29.060 3.06e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00310 K03038 - gmx:100790393 606.29