Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00308 ATGGCCACCGCCGCCGCCACGTCATACTTCTTTGGCACCCGCCTCAACAGCCCGACAACCTTAAACACTGGGAAATTCCACGCTCTCTTCAACTTCGGAACCAAGAAGGCGCCGCCGCCGCCGAAGAAAAAGGAATGGCTCGACGGAAGCATGATCGGCGACCGCGGGTTCGACCCGTTCGGATTCGCGAAGCCCGCGGAGTACCTTCAGTTCGACCTGGACTCGCTGGACCAGAACCTCGCGAAGAACGTCGCCGGAGACATCATCGGAACCAGGGTGGAGGCCGCGGAGGTCAAACCGACGCCGTTTCAGCCCTACTCCGAGGTCTTCGGCTTGCAGCGGTTCCGCGAGTGCGAGCTCATCCACGGAAGGTGGGCGATGCTGGGTGCTCTCGGTGCTTTGGCCGTTGAGGGTCTCACCGGTGTCGCATGGCAAGACGCCGGAAAGGTAGAGCTGGTAGAAGGGTCATCTTACCTGGGACTTCCTCTTCCATTTTCATTGACCACACTGATCTGGATCGAGGTGATAGTGATAGGGTACATAGAGTTTCAAAGAAATGCAGAACTTGACCCAGAGAAAAGGTTGTACCCTGGGGGAAGGTTCTTTGATCCTCTGGGTTTGGCCAATGATCCTGAAGAAAAGGCTAGACTTCAACTTGCAGAGATCAAGCATTCTCGTTTGGCCATGGTCGTCTTCCTCATCTTCGCAATTCAAGCTGCATACATTGTAGCAATTGACAGAGAATCATGGGGAGACATCTATTCCAGGACATTCCAATGCAGACATGGGAAAGCTTATCTCTTCAATAAGGTTGTGAATGTTTCTCTTGGTGAAATGGAAGAGAGAATGATGATGACTGGGCTACATACCGTGGCTGACATTTTCTGTGTGGGTTGTGGATCAATTGTGGGTTGGAAATATGAGACTGCCTATGAAAAAAGCCAGAAGTACAAGGAGGGAAAATCAGTGCTTGAACGGTACAAAGTGTCAGTCATCTTACCATTCTCAGTTAACGGTATTTGGATGAAGAAAGCATTTCAAGTGCCCTGTCTCTGA 1056 0.5152 MATAAATSYFFGTRLNSPTTLNTGKFHALFNFGTKKAPPPPKKKEWLDGSMIGDRGFDPFGFAKPAEYLQFDLDSLDQNLAKNVAGDIIGTRVEAAEVKPTPFQPYSEVFGLQRFRECELIHGRWAMLGALGALAVEGLTGVAWQDAGKVELVEGSSYLGLPLPFSLTTLIWIEVIVIGYIEFQRNAELDPEKRLYPGGRFFDPLGLANDPEEKARLQLAEIKHSRLAMVVFLIFAIQAAYIVAIDRESWGDIYSRTFQCRHGKAYLFNKVVNVSLGEMEERMMMTGLHTVADIFCVGCGSIVGWKYETAYEKSQKYKEGKSVLERYKVSVILPFSVNGIWMKKAFQVPCL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00308 351 ProSiteProfiles Yippee domain profile. 232 333 IPR034751 -
Cca01g00308 351 Gene3D Chlorophyll a/b binding protein domain 39 259 - -
Cca01g00308 351 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP29.3, CHLOROPLASTIC 2 241 - -
Cca01g00308 351 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 264 331 IPR004910 -
Cca01g00308 351 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 241 IPR001344 GO:0009765|GO:0016020
Cca01g00308 351 Pfam Chlorophyll A-B binding protein 44 239 IPR022796 -
Cca01g00308 351 SUPERFAMILY Chlorophyll a-b binding protein 38 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00308 Cca-Chr1 3353847 3360651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00308 12 240 Chloroplast and Mitochondria Gene Families AT3G08940 72.131 4.43e-124 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00308 K08915 - gmx:100820335 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00308 01 3353847 3360651 Cca05g01593 05 35193655 35196693 PCT