Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00303 ATGGACATGCAACATGTGAAAGATCAATACTTGAAACGACACGTGACTACAGGATGTTACGACGTAGATGTGTCAAATCCCAATTCAGTTTGGAAAAGTGAAACCGTCCTGTATTTCTACCTTCCGACGTTTGCAGCCCAAGTTGGTTTTATGTTGTTCTCAACTCGTTGCTTGTACTATATCCTCAGACCCTTAAACCAACCTCGTCTTGTTGCTGAGATTTTGATGGGGTTTCTGATAAGTCCAGAACTATTTGGATCATCAGCATTATCAGAGGTTCTCACGCCTATAAAATCAATCCTAACTACTGAAACCATATCATATGTGGGACTCATTTATTCCGTCTTCCTGGCTGGCTTGGACATGAACTTTGACACAATCTTAGGAGCAAAAAAGAAGGCCACAAGCATTGCCATTGCTGGAATTGCGATTCCAATGATATTGGGGAGTTTCATATACGCTTTAGCTCAAACTATGTACAAGGGACATCCGGAGTATTTGGCAGAATTCAACACAATCAAGGCCTATATATTTTGGACCTTAATTTATAGTGTCACAGGTTTTCCTATGGTTAGTCACATCCTTGCAGATCTCAAGCTTCTCTATACAGGACTTGGCAGAGTGGCCTTAACAACAGCCATGATCAGTGACTTCTATAATTGGGTCATGTTTGCATTGTTGGTTCCATTTGCCATTAACGGTGAAACTGCCATCTACTCGGTGCTGTGCACCATAGGTTTTGTCCTATTCTGCTTCATTGTTATCAGACCTCATTTGGTGGAGTTAATAGTGCGCAAAACCAATAAAAATGAGTGGGACAATTATGGTTTGCTATTTGTAGTCATGGGGGCCTATGCTTGTGCACTTGTTACAGATCTCCTAGGGACACACCCTGTTGTTGGGGCTCTAGTGTATGGAATAATGATACCTCGTGGTAAGTTTACTCACATGCTGATAGAGAAGTCTGAGGATTTTGGTGTTGTTTATCTGGCACCATTGTTCTTTGGTAGCAGTGGCATAAGACTCAGAGCAATATATGTTTTAAAAACTCAAGGTTTGGGCCTGGTGCTTCTAATTTTGATCCTGTCATGCATCCCAAAGATTATAAGCACTGTAGTAGTCACTCGCTTTTATGGCATGTCTGTTCTTGATGGTGTGGCTATTGGACTCCTTATGAACACCAAGGGCATCTTACCAATATTAATGCTCAACAGTGCCTGGGACAAGCAGATTTTGAGTGTGGAATCCTTCTCGATTTTGACCGTGGCTGTTCTCATAATGACCATGATGGTGCCTCTAATCATCAATGCCATATACAAGCCAAGAAAGCTATACAGGCAAAATAAACTAAAGACTATACAGAATTTAAAGGCCGAATCAGAGTTGAGAATTCTAGCTTGTGTCCATAACCCTCGCCAAGCCTCAGGAATGATCAACATCCTTGAACCATACCACACCACAAAACTTTCCCCTTTACACGTGTTTGCACTTCAGCTTGTAGAACTAACAGGGAACACCACATCCCTTTTGGCAACACACATCAACCAGCACAACCAACAACAAAGCGGTTCACAAGCACTCACCAAAGCACAAGAAGATTTGGAAAGCATCGTCAACATTTTCCAAGCATTCACAGGTACAAAAGAGAACACAACAGTTGAAACCTTTGCAGCTGCATCTACCTACTCAACTATTCATGAGGACATATACAATGTGTCACAAGAGAAGCAAGCAAACCTCATGCTACTTCCCTTCCACAAGCATTCAAACATAGAGGGCATTCTAGAGTTAACCAACAATACATTCCAAGACGTGAACCGAAATGTGATGAGGGATGCACCTTGTTCTGTTGGAATCTTTGTTGACCGTGGACTAGGGTCATTGTTCAAAGTCAACTTACGTGTGCTAATGATTTTCATTGGTGGACCTGATGACCGTGAAGCCTTGGCTGTTGCATGGAGGATGTCAAAGCACCAAGGGGTTCAACTTTCTGTTGCGAGGATCCTCATGCTTGGAGAGGCTGCAGAAGTTGATATGTTGAACAATGTTGAGTCTCGTAACCGTGGACTATTATCTGTGGTGCTAGACAATGAGAAGCAGAAGGAGTTGGATGATGAGTATGTGAGTGCATTTAGACTCAAGGCAGTGAGCAATGAGGATTCTATAAAGTATTCAGAAAAAGAGGTTCATTGTAGTGATGATATTCCTCGTGTGCTTAATGAGTTTGACCAAAATGGTTATGATTTGTACATTTTAGGACAAGGGGCAGGTAGGAACTCTTTGATCATGACAGAGTTGATGCACTGGACTGATTGTCCGGAACTTGGTGTTATAGGGGACATGGTGGCATCAAATAATTTTGGTTCGTGTTCTTCACTGCTTGTTGTACAGCAATATGGTTTTGGTGGAATGGTATTTGAGAATAATAATGCCTCACACCGTTCTAGAGAAGTGAATCCAAACCATGATGAATCTGAGTCTCATGCTGTTTAG 2493 0.4192 MDMQHVKDQYLKRHVTTGCYDVDVSNPNSVWKSETVLYFYLPTFAAQVGFMLFSTRCLYYILRPLNQPRLVAEILMGFLISPELFGSSALSEVLTPIKSILTTETISYVGLIYSVFLAGLDMNFDTILGAKKKATSIAIAGIAIPMILGSFIYALAQTMYKGHPEYLAEFNTIKAYIFWTLIYSVTGFPMVSHILADLKLLYTGLGRVALTTAMISDFYNWVMFALLVPFAINGETAIYSVLCTIGFVLFCFIVIRPHLVELIVRKTNKNEWDNYGLLFVVMGAYACALVTDLLGTHPVVGALVYGIMIPRGKFTHMLIEKSEDFGVVYLAPLFFGSSGIRLRAIYVLKTQGLGLVLLILILSCIPKIISTVVVTRFYGMSVLDGVAIGLLMNTKGILPILMLNSAWDKQILSVESFSILTVAVLIMTMMVPLIINAIYKPRKLYRQNKLKTIQNLKAESELRILACVHNPRQASGMINILEPYHTTKLSPLHVFALQLVELTGNTTSLLATHINQHNQQQSGSQALTKAQEDLESIVNIFQAFTGTKENTTVETFAAASTYSTIHEDIYNVSQEKQANLMLLPFHKHSNIEGILELTNNTFQDVNRNVMRDAPCSVGIFVDRGLGSLFKVNLRVLMIFIGGPDDREALAVAWRMSKHQGVQLSVARILMLGEAAEVDMLNNVESRNRGLLSVVLDNEKQKELDDEYVSAFRLKAVSNEDSIKYSEKEVHCSDDIPRVLNEFDQNGYDLYILGQGAGRNSLIMTELMHWTDCPELGVIGDMVASNNFGSCSSLLVVQQYGFGGMVFENNNASHRSREVNPNHDESESHAV 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00303 830 Pfam Sodium/hydrogen exchanger family 52 438 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cca01g00303 830 Gene3D - 477 775 - -
Cca01g00303 830 Gene3D - 43 448 IPR038770 -
Cca01g00303 830 PANTHER CATION/H + ANTIPORTER 15 814 - -
Cca01g00303 830 PANTHER CATION/H+ EXCHANGER 3 15 814 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00303 Cca-Chr1 3247929 3251721 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00303 19 799 Antiporter Super Family AT2G13620 36.662 3.92e-179 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00303 - - gmx:100802381 1333.93