Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00298 ATGGCCTCCAGAGGAACTGGAACGGTGATTTTTGCATGTCTCTTATGGCTTTTCTTCCTCTGCGCCACCATTGCTTTCTTTCAGCTCCACTTGGTAGACAACGGAACCAACCACTCTTCCTCCCGCGCTGACTTAATCACAACTCAACATCATCTCTCAGATACCCCTTTGGGACAGGATTTGGAGGGTGTCACTCACAAGGTCTATTTTGATGTAGAGATCCATGGGAAATTAGCGGGTCGCATAGTCATGGGTCTTTTTGGGAACACAGTACCAAAAACAGTAGGTATGCATCACATTTCAGGAGAGAAAGGAGTGGGAATAAGTGGGAAGCCTCTTCATTATAAAGGGAGCACATTCCATAGGATTATACCAAGCTTTATGGTCCAGGGGGGTGATTTCACCCGTGGTGATGGAAGAGGTGGAGAATCAATCTATGGTGATAAGTTTGCCGATGAAAACTTTGAGTTGAAGCATACTGGGCCAGGATACCTATCCATGGCAAATTCTGGAGAAGACACCAACGGATCCCAGTTTTTCATAACAACAGTTAAAACCAGCTGGCTGGATGGACGCCATGTTGTATTTGGCAAGGTACTTTCTGGTATGGACATATTGTACAAGATTGAAGCAGAAGGAAGTGAAGGTGGCTCGCCTAAGAGCAAGGTACGAGGATAA 678 0.4572 MASRGTGTVIFACLLWLFFLCATIAFFQLHLVDNGTNHSSSRADLITTQHHLSDTPLGQDLEGVTHKVYFDVEIHGKLAGRIVMGLFGNTVPKTVGMHHISGEKGVGISGKPLHYKGSTFHRIIPSFMVQGGDFTRGDGRGGESIYGDKFADENFELKHTGPGYLSMANSGEDTNGSQFFITTVKTSWLDGRHVVFGKVLSGMDILYKIEAEGSEGGSPKSKVRG 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00298 225 Gene3D - 58 224 IPR029000 -
Cca01g00298 225 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 115 132 IPR020892 GO:0003755|GO:0006457
Cca01g00298 225 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 69 225 IPR002130 GO:0000413|GO:0003755
Cca01g00298 225 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 178 190 IPR002130 GO:0000413|GO:0003755
Cca01g00298 225 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 120 132 IPR002130 GO:0000413|GO:0003755
Cca01g00298 225 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 163 178 IPR002130 GO:0000413|GO:0003755
Cca01g00298 225 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 86 101 IPR002130 GO:0000413|GO:0003755
Cca01g00298 225 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 191 206 IPR002130 GO:0000413|GO:0003755
Cca01g00298 225 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 49 223 - -
Cca01g00298 225 SUPERFAMILY Cyclophilin-like 64 223 IPR029000 -
Cca01g00298 225 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 70 223 IPR002130 GO:0000413|GO:0003755
Cca01g00298 225 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-2 49 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00298 Cca-Chr1 3198230 3202290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00298 114 210 U-box Gene Family AT5G67530 52.041 2.10e-22 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00298 K01802 - gmx:100792649 377.867