Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00295 ATGGTTTTTTCATTCTTTGTAAATCGAAACACATCCAAAGCCCTTGTACTCTATTTAGCTTTGAAACAAATCCATAGCAGGATATTTTGTTTATTTGCAAATGAAAAACATAAGTATTTATTTCTTGGTTGTGGCAGGTTTACTCAACGGAATATGCTGAGAGTGTACCCAAAAGGTACTCGCATTACCTCGACAAATTATAACCCATTGATTGGGTGGATGCATGGAGCTCAAATGGTTGCGTTTAACATGCAGGGCTATGGGAGATCTCTTTGGTTGATGCATGGAATGTTCAAAGCCAATGGCGGATGTGGTTATGTTAAAAAACCAGATTTTCTATTAAAGACTGGTCCCAATAATGAGGTCTTTGATCCTAAAGCTCATTTGCCTGTGATGACTACTTTGAAGGTGACTATATATATGGGGGAAGGATGGTTTCACGATTTCAAGCACACGCACTTTGATCAATTCTCACCCCCTGACTTCTATGCAAGAGTGGGGATTGCTGGAGTCCCTGATGACACGGTTATGAAAAAAACTAAGAGTGTAGAGGATAATTGGTTGCCTTCATGGAATGAGGTATTTGAGTTCCCACTCACTGTTCCAGAACTGGCTCTACTTCGTGTAGAAGTTCATGAGTATGACATGTCTGAGAAGGATGACTTTGGTGGCCAAACGTGCTTACCTGTGTGGGAACTAAGAAGTGGAATTAGAGCAGTTCCACTATATTCCCGCAGAGAAGATAATCATTACAATGTTATGAAAATTGACCACATCTGTTCAAATTACAAGAAAATGCTTGAGTGGGAATTCGGCGAAGATTTCATAAATGATAACTTTGAAGAAGAATGCATAAGGTGGTGTGGATCTCAGCGCTCAGCAGTGCCACCCAACATGACATCACCGTGGAATCACCAGCCGCCCCCGCCCCTCTCTGACTCCGACTCCGACGGTGGCGACGATTCCTCCGCCGCGGAGCCCCTCCGCCACTCCGACCTCTCGAACTCCATATTGAAGCCGTACCTCGCCCTCTCCGGTCCCTCCGGCGGCGACCTCTCAAAGATCCAATCTTTCCTCACCTCCTCCTCCGCCGGCGCCCTCTCGTGCCTCATCTGCCTCGAACGCATCAAACCCTCCGACCCCACCTGGTCATGCTCCTCCCTCTGCTTCGCCGTCTTCCACCTCATCTGTATCCAGAGCTGGGCCCGCCAGTCTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccgccacgcgcctccccctctctgccgccgctgcctccgccgccgccCTCTGGCACTGCCCCAAATGCCGATCCGAGTACTCCAAATCCCACATTCCAAAATCCTACCTTTGCTTCTGCGGCAAGCTCGAGAACCCCCCCAACGATCCATGGATTCTTCCACACTCTTGCGGCGAGGTCTGCGAGAAACCCTTGAAGCACAACTGCGGCCACCACTGCTTGTTGCTCTGCCACCCCGGACCCTGCCCCTCTTGCCCCAAACTCGTTAAAGTTCCATGCTTTTGTGGGTCCCACCAAGATGTTCGCCGCTGCGGGTTCAAGGAATTCTCTTGCAACAACCCTTGCTCAAAGATTTTGGATTGCGGGGTTCACCGCTGCAATGAGGTTTGCCACCGTGGCAGTTGCCCTCCCTGCCGGACACGTGGCACTCACACGTGCCGGTGCGGGAGGGTGAAGGAGGAGAGGGAGTGTTGTGATCGTGTTTTCCAGTGTGATTCTCCCTGTGAGAAGAGGCTTAGCTGTGGGAAGCATGTTTGTGAGAGAGGGTGCCATTCTGGTGAGTGTGGTGAGTGTCCCCTCAAGGGGAAGAGAACATGCCCTTGTGGGAAAAGGGTTTATGAGGGAATGCCTTGTGATGCTCCTGTGCAGCTTTGTGGGGCTACTTGTGATAAGATGCTACCCTGTGGCTACCATAGGTGCCCTGAGAGGTGCCACCGTGGACAGTGTGTTGAGACTTGTAGGGTTGTTGTGAAGAAGTCGTGCCGGTGTGGGAGCCTCAAGAAAGATGTTCCTTGCTATCAAGATTTGGCGTGTGAAAGGAAGTGTCAGACAGTTCGTGACTGTGGTCGGCATGCTTGCAAGCGGCGCTGCTGCGATGGGGATTGCCCTCCCTGCTCAGAGATATGCGGCAGGAGGCTTCGATGTAAGAACCATAAATGCCCTTCTCCATGCCATAGAGGTCCTTGTGCTCCTTGCCCCATAATGGTGACAATTTCATGTGCATGTGGAGAGACACGTTTTGAGGTTCCTTGTGGTACCGAAATGGACCAAAAGCCACCTAGATGTCCTAAAAGATGTCCTATTGCTCCTTTATGCCGGCATGCATCAACTTGCAAGCCGCATAAATGCCATTATGGAGCCTGCCCTCCTTGTCGGCTACCTTGTGCAGAAGAATACCAATGTGGCCATGCATGCAAATTAAGGTGTCATGGTGCTAAGCCTCCTCCCAATCCAGAGTTTACTCTTAAACCAAAGAAAAAGAAGATTATACAACAAAGTGAAAGTGTTCCTGGCACTCAATGCCCTCCTTGCCCAGAACTTGTGTGGAGATCATGTGTTGGGCAACACATTGGTGCTGAGAGAATGATGGTCTGCTCTGATAAATCACAGTTTTCCTGTGAAAATTTATGTGGTAATCCTCTACCATGTGGCAATCATTATTGTACAAAAACCTGTCATGCCTTGGAGAACCAGTTACATGGAGGCGAGTCTTGTGAAGATTGTTATCTTTCTTGCCAAAAGGAAAGAGAGCCTGCGTGTCCACATCACTGCCCTCGGCGGTGCCATCCTGGAGACTGTCCTCCATGCAAGGTGCTCATTAAACGGTCATGTCACTGTGGCGCAATGGTCCATGTGTTTGAGTGCATATACTACAACAGCTTGTCTGCAAAGGGTCAGGAGACTGCCCGTTCATGTGGTGGGCCATGTCACAGAAAGTTGCCAAATTGTACACATCTATGCCCGGAGACATGTCATCCTGGTCAATGCCCAAATGCTGATAAATGCTGTAAAAAGGTCACTGTCCGATGCAAATGCCAAACATTGAAAAAGGAGTGGGTTTGCCAAGATGTTCAAGCAGCATATCATCTTGATGGTTGCCATCCAAGGGATATACCAAAAAATCAATTTGGAATTGGACTTATTCCTTGCAATTCTGATTGCAAGAGTAAAGTACAGGTTGTTGAGTCAGAACTACAGTTACGCAAATCTATAGTTACAGAGGTGCAAGAGCCAGATATTGATAAATCAGTTCGAAAGCGACGAAAAAGGCGGGAACGGGTTCTAGAATCCAAGGAAACATCAAAACTACAGAAAATTATTTCCAGAACGAAGCAGCTTCTTCTATTTGTCTTTATTTTGGTCACACTTCTTGCTGCTACATATTATGGGTACAAGGGACTATTATGGCTCTCTGATTGGATGAATGAAGTTGATGAACGGAGACAGAGATATTCTCGAATCAAATGA 3684 0.4435 MVFSFFVNRNTSKALVLYLALKQIHSRIFCLFANEKHKYLFLGCGRFTQRNMLRVYPKGTRITSTNYNPLIGWMHGAQMVAFNMQGYGRSLWLMHGMFKANGGCGYVKKPDFLLKTGPNNEVFDPKAHLPVMTTLKVTIYMGEGWFHDFKHTHFDQFSPPDFYARVGIAGVPDDTVMKKTKSVEDNWLPSWNEVFEFPLTVPELALLRVEVHEYDMSEKDDFGGQTCLPVWELRSGIRAVPLYSRREDNHYNVMKIDHICSNYKKMLEWEFGEDFINDNFEEECIRWCGSQRSAVPPNMTSPWNHQPPPPLSDSDSDGGDDSSAAEPLRHSDLSNSILKPYLALSGPSGGDLSKIQSFLTSSSAGALSCLICLERIKPSDPTWSCSSLCFAVFHLICIQSWARQSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATRLPLSAAAASAAALWHCPKCRSEYSKSHIPKSYLCFCGKLENPPNDPWILPHSCGEVCEKPLKHNCGHHCLLLCHPGPCPSCPKLVKVPCFCGSHQDVRRCGFKEFSCNNPCSKILDCGVHRCNEVCHRGSCPPCRTRGTHTCRCGRVKEERECCDRVFQCDSPCEKRLSCGKHVCERGCHSGECGECPLKGKRTCPCGKRVYEGMPCDAPVQLCGATCDKMLPCGYHRCPERCHRGQCVETCRVVVKKSCRCGSLKKDVPCYQDLACERKCQTVRDCGRHACKRRCCDGDCPPCSEICGRRLRCKNHKCPSPCHRGPCAPCPIMVTISCACGETRFEVPCGTEMDQKPPRCPKRCPIAPLCRHASTCKPHKCHYGACPPCRLPCAEEYQCGHACKLRCHGAKPPPNPEFTLKPKKKKIIQQSESVPGTQCPPCPELVWRSCVGQHIGAERMMVCSDKSQFSCENLCGNPLPCGNHYCTKTCHALENQLHGGESCEDCYLSCQKEREPACPHHCPRRCHPGDCPPCKVLIKRSCHCGAMVHVFECIYYNSLSAKGQETARSCGGPCHRKLPNCTHLCPETCHPGQCPNADKCCKKVTVRCKCQTLKKEWVCQDVQAAYHLDGCHPRDIPKNQFGIGLIPCNSDCKSKVQVVESELQLRKSIVTEVQEPDIDKSVRKRRKRRERVLESKETSKLQKIISRTKQLLLFVFILVTLLAATYYGYKGLLWLSDWMNEVDERRQRYSRIK 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00295 1227 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 46 112 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Cca01g00295 1227 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 312 1224 - -
Cca01g00295 1227 MobiDBLite consensus disorder prediction 297 328 - -
Cca01g00295 1227 CDD NF-X1-zinc-finger 750 798 - -
Cca01g00295 1227 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 312 1224 IPR034078 GO:0003700
Cca01g00295 1227 SMART znfxneu3 1055 1077 IPR000967 GO:0005634|GO:0008270
Cca01g00295 1227 SMART znfxneu3 760 779 IPR000967 GO:0005634|GO:0008270
Cca01g00295 1227 SMART znfxneu3 955 982 IPR000967 GO:0005634|GO:0008270
Cca01g00295 1227 SMART znfxneu3 992 1010 IPR000967 GO:0005634|GO:0008270
Cca01g00295 1227 SMART znfxneu3 600 619 IPR000967 GO:0005634|GO:0008270
Cca01g00295 1227 SMART znfxneu3 548 566 IPR000967 GO:0005634|GO:0008270
Cca01g00295 1227 SMART znfxneu3 574 596 IPR000967 GO:0005634|GO:0008270
Cca01g00295 1227 SMART znfxneu3 850 865 IPR000967 GO:0005634|GO:0008270
Cca01g00295 1227 SMART znfxneu3 707 727 IPR000967 GO:0005634|GO:0008270
Cca01g00295 1227 SMART znfxneu3 787 806 IPR000967 GO:0005634|GO:0008270
Cca01g00295 1227 SMART znfxneu3 873 918 IPR000967 GO:0005634|GO:0008270
Cca01g00295 1227 SMART znfxneu3 653 672 IPR000967 GO:0005634|GO:0008270
Cca01g00295 1227 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 134 251 IPR035892 -
Cca01g00295 1227 ProSiteProfiles C2 domain profile. 115 244 IPR000008 -
Cca01g00295 1227 CDD NF-X1-zinc-finger 777 825 - -
Cca01g00295 1227 CDD NF-X1-zinc-finger 590 638 - -
Cca01g00295 1227 CDD NF-X1-zinc-finger 697 746 - -
Cca01g00295 1227 PRINTS Phospholipase C signature 52 73 IPR001192 GO:0035556
Cca01g00295 1227 PRINTS Phospholipase C signature 228 238 IPR001192 GO:0035556
Cca01g00295 1227 PRINTS Phospholipase C signature 73 91 IPR001192 GO:0035556
Cca01g00295 1227 SUPERFAMILY PLC-like phosphodiesterases 43 125 IPR017946 GO:0006629|GO:0008081
Cca01g00295 1227 Gene3D C2 domain 130 269 IPR035892 -
Cca01g00295 1227 Pfam NF-X1 type zinc finger 653 671 IPR000967 GO:0005634|GO:0008270
Cca01g00295 1227 Pfam NF-X1 type zinc finger 854 864 IPR000967 GO:0005634|GO:0008270
Cca01g00295 1227 Pfam NF-X1 type zinc finger 781 805 IPR000967 GO:0005634|GO:0008270
Cca01g00295 1227 Pfam NF-X1 type zinc finger 760 778 IPR000967 GO:0005634|GO:0008270
Cca01g00295 1227 Pfam NF-X1 type zinc finger 994 1009 IPR000967 GO:0005634|GO:0008270
Cca01g00295 1227 Pfam NF-X1 type zinc finger 600 618 IPR000967 GO:0005634|GO:0008270
Cca01g00295 1227 Pfam NF-X1 type zinc finger 707 726 IPR000967 GO:0005634|GO:0008270
Cca01g00295 1227 Pfam NF-X1 type zinc finger 955 965 IPR000967 GO:0005634|GO:0008270
Cca01g00295 1227 Pfam NF-X1 type zinc finger 548 565 IPR000967 GO:0005634|GO:0008270
Cca01g00295 1227 CDD NF-X1-zinc-finger 643 690 - -
Cca01g00295 1227 CDD C2_PLC_like 133 246 - -
Cca01g00295 1227 Pfam C2 domain 134 236 IPR000008 -
Cca01g00295 1227 CDD NF-X1-zinc-finger 994 1021 - -
Cca01g00295 1227 Gene3D Phosphatidylinositol (PI) phosphodiesterase 25 127 IPR017946 GO:0006629|GO:0008081
Cca01g00295 1227 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 46 113 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Cca01g00295 1227 SMART plcy_3 12 114 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Cca01g00295 1227 SMART C2_3c 134 242 IPR000008 -
Cca01g00295 1227 CDD NF-X1-zinc-finger 536 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00295 Cca-Chr1 3149837 3164911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00295 46 242 Acyl Lipid Metabolism Gene Families AT3G55940 82.234 2.46e-114 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Cca01g00295 C2 1.6e-10 CL0154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00295 K15683 - gmx:100799540 1492.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00295 01 3149837 3164911 Cca05g01599 05 35289298 35294112 PCT