Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00294 ATGGATACTGAAATTATGAGCATTGACATGAACGATACCACAAATGATGCAATAGGTTTTACTTGGGCAGTAGACAGTGCCATATGGAGTAGGAGCCCATCAAATTTGGGATCATCCCCTGTCCATAGTTTTGCTTGGAAAGTAGACAGTGCAATATGGAGTAGGACTCCCAGTCCCTCCAATTGGGGAACATCCCCTGTTCACAGTTTTGCTTCAGTAGTGGACACAGCTATAAGAAGTAGGACTGCCTCAGATTTGGGAACATCTCCTCCTCTCTGTAGTTTTGCTTCATTAGTAGGCAATATTATTGGTGAAGGTTTTCAAATATTTACCCTTGCTGAGCTTGTAGCAGCCACCAACGGTTTCTCACTTGAGAGCAAGATTGGTGCCGGAAGCTTTGGTGTTATGTACAGAGGCAAACTCTTTGATGGCAGTGAGGTGGCAATCAAAAGGTGTGAGATGTGGTCAAAGGGAACGAGTTCATTTATGTCTGAATTGGCCTTCTTCTCCCGTTTGCACCATAAGCACTTGGTTGAAGTAGTTGGATTCTGTCAAGAGAAAGACGAGAGGCTCTTGGTGTATGAGTACTTGGAGAATGGGACTTTGTACGATCGTCTGCATGACAAGCGTAGCAATGTGTTGAATTCATGGAAAATGAGGATCAAAGTTGCTTTAGACGCTTCCCGAGGAATCCAACATCTTCATAGATATGCAGTTCCATCTATTGTTCATAGAGATATCAAGTCTTCCAACATTTTTCTTGATGCTACTTGGAGGGCAAGCGCAAGATTATGTGGCTTTGGATTGTCTTTGATGAGTCCAGAACCTGACTATAATTACCGATTAATGAAGGCATTAGGAACCGTTGGACACATTGATCCTGATTCCTGA 891 0.431 MDTEIMSIDMNDTTNDAIGFTWAVDSAIWSRSPSNLGSSPVHSFAWKVDSAIWSRTPSPSNWGTSPVHSFASVVDTAIRSRTASDLGTSPPLCSFASLVGNIIGEGFQIFTLAELVAATNGFSLESKIGAGSFGVMYRGKLFDGSEVAIKRCEMWSKGTSSFMSELAFFSRLHHKHLVEVVGFCQEKDERLLVYEYLENGTLYDRLHDKRSNVLNSWKMRIKVALDASRGIQHLHRYAVPSIVHRDIKSSNIFLDATWRASARLCGFGLSLMSPEPDYNYRLMKALGTVGHIDPDS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00294 296 Pfam Protein tyrosine and serine/threonine kinase 123 278 IPR001245 GO:0004672|GO:0006468
Cca01g00294 296 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 65 295 IPR044815 GO:0004674
Cca01g00294 296 Gene3D Phosphorylase Kinase; domain 1 97 196 - -
Cca01g00294 296 Gene3D Transferase(Phosphotransferase) domain 1 197 296 - -
Cca01g00294 296 ProSiteProfiles Protein kinase domain profile. 122 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00294 296 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 65 295 - -
Cca01g00294 296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Cca01g00294 296 SUPERFAMILY Protein kinase-like (PK-like) 105 295 IPR011009 -
Cca01g00294 296 SMART serkin_6 122 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00294 Cca-Chr1 3147344 3148234 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00294 110 295 Receptor kinase-like Gene Family AT3G55950 60.199 2.10e-73 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Cca01g00294 PK_Tyr_Ser-Thr 4.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00294 - - vun:114193400 288.5