Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00293 ATGGAAAATCAAATGGATGGTAGCATTGACATGAGAGTAGATGCAATATTAAGTTATAGTTGGAGAGTGGACAGTGCCATAAGGAGTGAGACTGCTTCAATTTTGGGAGCATCACCTCTCCATACTTTTTCTTCGTTAGTGGACAGTGCCATAAGGAGTAGGACTCCATCAATATCAATTTCAAATTGGGGAGCATCCCCTCTCCATACTTTTGCTTCCGCAGTAGACAATGCTGCTCCACGATTATTCACCCTGCCTGAGATTCAAGCAGCCACCAACAATTTCTCACGTAACAAGAAGATTAGTGACGCTGGAAGCTTTGGTGTTGTGTACAGAGCAAAACTTGTTGATGGTCGTGAGGTTGCAGTCAAGAGGGGTAATGCCCGGTCAAACATAAAGGGTCCATTTAAGTCTGAATTGGCCTTCTTGTCCCGTCTGCACCACAAGCACTTGGTTGGGCTAGTTGGGTTCTGTGAAGGGGATTATGAGAGGCTGATCTTGGTTTATGAGTACATGAAGAACAGGTCCTTGTATTATCATTTGCATCGCAAGTATAGCAGCGTGTTGAATTCGTGGAAAAAGAGGATCAAAATTGCTTTAGATGCTTCCCGGGGAATAGAATATCTTCATAATAACCATGTAGTTCCATCTATTATTCATGGACGTATAAAGTCTGCCAACATTCTTCTTGATGCCACTTGGACGGCAAGAGTATCTGATTTTGAATTGTCCTTCTGGTGTCCAGAATCTGCCTGTGATTACCGACCAATGGAGGCAGCAGCAGCAAGAAGCGTTGGATACATCGATCCTGAGTATCATGATCCAAATGTGTTGACACCAAAGAGTGATGTGTATGGGCTTGGAGTTGTACTGCTTGAACTTTTAACAGGAAAGAGAGCTATATTCAAGTCGGGGAAAGATGGAGACATCTCATTATTAAGTCTGGTGGAGGTTGCAGTGCCCGCTATTTTGGCTCAAGATTTGGTGAACATTTTGGATCCAAGGGTTAGACTGCCCAATGTGAATGAAGCATTGGCAGTGGAGATAGTGGCCTACACTGCTATCCATTGTGTCAGTTTGGAAGCCCAACAGAGACCGACAATGGCCCACGTCGTGCTCAATTTGGAGAGGGCTTTGACTATAACTGATTGTGATAGTGATAATGACCCGAATGATATCAATCGCATTAACAGCAGTGAAGAAGGAACTACTGAAGTTGGCCCAGTAACGGAGATTTTGAGTAATAAGAATAAGGTTTTAGGTTCCAAATTTATTGCCACGTTTGTAAAAAAAATAAAAAGAAAGCAACTATAA 1314 0.4277 MENQMDGSIDMRVDAILSYSWRVDSAIRSETASILGASPLHTFSSLVDSAIRSRTPSISISNWGASPLHTFASAVDNAAPRLFTLPEIQAATNNFSRNKKISDAGSFGVVYRAKLVDGREVAVKRGNARSNIKGPFKSELAFLSRLHHKHLVGLVGFCEGDYERLILVYEYMKNRSLYYHLHRKYSSVLNSWKKRIKIALDASRGIEYLHNNHVVPSIIHGRIKSANILLDATWTARVSDFELSFWCPESACDYRPMEAAAARSVGYIDPEYHDPNVLTPKSDVYGLGVVLLELLTGKRAIFKSGKDGDISLLSLVEVAVPAILAQDLVNILDPRVRLPNVNEALAVEIVAYTAIHCVSLEAQQRPTMAHVVLNLERALTITDCDSDNDPNDINRINSSEEGTTEVGPVTEILSNKNKVLGSKFIATFVKKIKRKQL 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00293 437 Gene3D Transferase(Phosphotransferase) domain 1 172 401 - -
Cca01g00293 437 ProSiteProfiles Protein kinase domain profile. 96 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00293 437 Gene3D Phosphorylase Kinase; domain 1 66 171 - -
Cca01g00293 437 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 74 387 - -
Cca01g00293 437 Pfam Protein tyrosine and serine/threonine kinase 104 374 IPR001245 GO:0004672|GO:0006468
Cca01g00293 437 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 74 387 IPR044815 GO:0004674
Cca01g00293 437 SUPERFAMILY Protein kinase-like (PK-like) 76 375 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00293 Cca-Chr1 3145319 3146918 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00293 83 382 Receptor kinase-like Gene Family AT3G55950 58.934 1.17e-101 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Cca01g00293 PK_Tyr_Ser-Thr 1.6e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00293 - - ccaj:109800174 846.269