Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00292 ATGTCAGATGTTGAAATGGATAGTGAGCTTGTTGGGAGTATTGAGATGGGCGATATGAGATTGACAGGTGATGCAATATTGAGTTATAGTTGGAGAGTGGACAGTTTGATTAGGAGTGAGACTGCGTCTCACTTGGGAGATTCTCCTCTCTATACTTTTGCTTCGCGTGTGGACAGTGCCATAAGGAGTAGCAGTGCTAGTTACGAAGCAGATTATGAGGCACACAATAACAATTCAACTACCACAAATGTCCCTTCTCATTTTCAAGCACAAACTCAGCTTTCCCTTCAACAAGTAGAACCAGACAAGAGCCATTCTAATGAGCctgaggctgatgctgatgctgatgctgatgcCTCTTCAGGGATCATGAGATCAACCACTTTGGCTGCCAAGAGGGGCATGGGAGCGCCAAGAATGCGGTGGACAACCACACTCCCCTCTCGATTTGTTCATGTGGTTCAGCTTCTCGGTCGCCATCAAAGTAAACGTTTGAATTCAAAGGATGGTAGCAAAGAAGAGAATGGCTTTAGTGGTTTAAGTGGCAAGGTGTCCTCTTCATCTATGCTTCTAAGTCCTCAAAGTGAGGATGATATATTGCAGTTCAGCAATTTGAAGAGCTTCACATTCAATGAGTTAAGAATTGCTACAAGGAACTTTCGTCGGGATGGTATAGTGGGTGAAGGTGGTTTTGGTTTTGTGTTTAGGGGTTGGATTGATAAGAAGACACGAGACCCTGCTAAACCAGGGACAGGAATGGTCATTGCTGTGAAGAGGCTTAACAAGGAAAGCTTCCAAGGATTTAGTGAATGGTCGGCAGAAATCAACTGCTTGGGGCGGCTGTGTCATCCTAATATTGTGAAACTAATTGGTTACTCCTTAGAGGGCGGTGACTTGAGCTTGGTGTATGAATTTGTGGCCAAGGGTAGTTTGGATAATCACTTATTCAGGAGGGCTTGTTCTTGGACCATCCGTGTGAAGGTTGCTCTTGATGCTGCTAACGTTCTTGCATTTCTACACAGTGATGAAGTAAATGTAATATATAGGGACTTCAAAAGTTCAAATATCTTACTCGATTCTGTAAGTCAATCACATTGA 1098 0.4217 MSDVEMDSELVGSIEMGDMRLTGDAILSYSWRVDSLIRSETASHLGDSPLYTFASRVDSAIRSSSASYEADYEAHNNNSTTTNVPSHFQAQTQLSLQQVEPDKSHSNEPEADADADADASSGIMRSTTLAAKRGMGAPRMRWTTTLPSRFVHVVQLLGRHQSKRLNSKDGSKEENGFSGLSGKVSSSSMLLSPQSEDDILQFSNLKSFTFNELRIATRNFRRDGIVGEGGFGFVFRGWIDKKTRDPAKPGTGMVIAVKRLNKESFQGFSEWSAEINCLGRLCHPNIVKLIGYSLEGGDLSLVYEFVAKGSLDNHLFRRACSWTIRVKVALDAANVLAFLHSDEVNVIYRDFKSSNILLDSVSQSH 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00292 365 Gene3D Transferase(Phosphotransferase) domain 1 306 363 - -
Cca01g00292 365 SUPERFAMILY Protein kinase-like (PK-like) 195 360 IPR011009 -
Cca01g00292 365 ProSiteProfiles Protein kinase domain profile. 220 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00292 365 PANTHER OS01G0588500 PROTEIN-RELATED 172 360 - -
Cca01g00292 365 Pfam Protein tyrosine and serine/threonine kinase 225 360 IPR001245 GO:0004672|GO:0006468
Cca01g00292 365 Gene3D Phosphorylase Kinase; domain 1 190 305 - -
Cca01g00292 365 PANTHER KINASE 1B 172 360 - -
Cca01g00292 365 ProSitePatterns Protein kinases ATP-binding region signature. 226 258 IPR017441 GO:0005524
Cca01g00292 365 MobiDBLite consensus disorder prediction 162 189 - -
Cca01g00292 365 MobiDBLite consensus disorder prediction 95 123 - -
Cca01g00292 365 MobiDBLite consensus disorder prediction 172 189 - -
Cca01g00292 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 346 358 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00292 Cca-Chr1 3123095 3126663 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00292 206 359 Glycoside Hydrolase AT3G07070 42.857 7.24e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca01g00292 PK_Tyr_Ser-Thr 1.1e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00292 - - gmx:106795104 272.322