Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00291 ATGAAAAAAGTATTTTGTTTTGAATTGTCCTTCTCGAGTCCAAAACCTTACTTTGATTACCTACCATTGGAGGAAGCAGTAGCATACATAGACCCCGAGTACTATGGTGTAAATGAGTTGACACCAAAGAGTGATGTGTATGGGTTTGGAGTTGTATTGCTTGAACTTTTAACAGGAAAGAAACCTACATTCGAGTATGGGGAAGAAGGAGACACCTTATTATTAAGTCTAGTGGACGCTGTAGTGCCTGTTATTTTGGGTGGAGAATTGCTCAAAATTTTGGATCCAGGGGGTGGACCACCCCATGTCAATCAATCTTTGGTTGTGGAGATAGTGGCATATACTATTATCCATTCTGTTGCTTAA 366 0.3989 MKKVFCFELSFSSPKPYFDYLPLEEAVAYIDPEYYGVNELTPKSDVYGFGVVLLELLTGKKPTFEYGEEGDTLLLSLVDAVVPVILGGELLKILDPGGGPPHVNQSLVVEIVAYTIIHSVA 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00291 121 Gene3D Transferase(Phosphotransferase) domain 1 15 117 - -
Cca01g00291 121 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 3 120 - -
Cca01g00291 121 Pfam Protein tyrosine and serine/threonine kinase 26 65 IPR001245 GO:0004672|GO:0006468
Cca01g00291 121 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 3 120 IPR044815 GO:0004674
Cca01g00291 121 SUPERFAMILY Protein kinase-like (PK-like) 27 103 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00291 Cca-Chr1 3115558 3116140 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00291 3 120 Receptor kinase-like Gene Family AT3G55950 46.875 2.24e-18 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Cca01g00291 PK_Tyr_Ser-Thr 1.1e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00291 - - gmx:100805573 139.043