Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00290 ATGATAAGGAGTGAGACTGCGTCAAATTTGGGAGAATCCCCTCTCCCTAGTTTTGATTCCCGCGTTGACAGAGCCATAAGGAGTAGGACTCCATCGTCAATGTCAAATTTTGAATCATCCCCTCTCCATACTATTCCACGATTATTCACCCTGCGTGAGCTTAAAGAAGCCACCAACAATTTCTCAGTTGAGAACAAGATTGGTGTTGGAAGCTTTGGTGATGTCTACAGAGGCAAACTCTTTGATGGTGGTGACGTGGCAATCAAAAGTGATGGTTTCTGGTCAAAGATAGAGGGTCTAAATAACTCTGAATTGGCCAGCTGGTCCCGTCTACCACCCCACAAGCACTTGGTTGGGGTAGTTGGGCTCTGTCAAGAGAATGGTGAGAGGTTCTTGGTGTATGAGTACATGAAGAATTTGTCCTTGTATGATCAATTGCATGACAAGTATAGAAGTGTGTTGAATTCGTGGAAAATGAGGATAAAAATTGCTTTGGATGCTTCCCGGGGAATACAACATGTTCAAAACTATGCGGTTCCACATGCTCACAGAGGAGTAATGAAGTCTTCCAACATTCTTCTTGATGGCAGTTGGACGGTGAAAGTGTCTGATTTTAGAATGACGTTTATGAAGAACACAACGGGATGTGATGAATGCATTGATCCCGAGTACGACGGTGTAAATGCGTTGACAAAAAAGAGAGATGTATATGGGTTTGGAGTTGTACTGCTTGAACTTTTAACCGGAAAGAGACCTATACTCGACTCTCACGGAGAGACCTTATTAAGAATGGTGGGCGGTGGAAAGCCTAATATTTTGCTTCGAGATCTGAAAATGTTTTCGGCTAAAGATTTGATGAAAAATTTGGATTCAAAGGTTGGACCACCGGATGTGAATGAAGCACGTGCGCTGATGTTAATGGCTGATACCGCTATCCCCTGTGTCACTGTGACTCAAGAAACACTAACCATGGATGCTATTGTGGAGAATTTGGAGCAGGCTTTGGCTATAGCCATATGGACTAGTGACAGTGGCAGCGATAGTGAAGTAGATTATGAAGCACACAATTCAACAAGCACACTTCATACTGCCACCCAGTATCAAATCATATCAAGCACGAGGCAAAAGATAGTTATAAAGGTGCAAATGCACTGCAGCAAATGCCAAAGGAAGGCCTTTACAATTGCATTAATTGCAGATGGTGTGACTTCGGTGTGCCTTCAAGGGGCAGAACGAGATCAACTGGTGGTTACCGGATATGGGGTTGATGCGGTTGATTTGGCTAGGGCGTTAAGGAAGAAACTTCACCTTGCCTACATCTTAAGTGTGGTAAAGATCTAA 1341 0.4355 MIRSETASNLGESPLPSFDSRVDRAIRSRTPSSMSNFESSPLHTIPRLFTLRELKEATNNFSVENKIGVGSFGDVYRGKLFDGGDVAIKSDGFWSKIEGLNNSELASWSRLPPHKHLVGVVGLCQENGERFLVYEYMKNLSLYDQLHDKYRSVLNSWKMRIKIALDASRGIQHVQNYAVPHAHRGVMKSSNILLDGSWTVKVSDFRMTFMKNTTGCDECIDPEYDGVNALTKKRDVYGFGVVLLELLTGKRPILDSHGETLLRMVGGGKPNILLRDLKMFSAKDLMKNLDSKVGPPDVNEARALMLMADTAIPCVTVTQETLTMDAIVENLEQALAIAIWTSDSGSDSEVDYEAHNSTSTLHTATQYQIISSTRQKIVIKVQMHCSKCQRKAFTIALIADGVTSVCLQGAERDQLVVTGYGVDAVDLARALRKKLHLAYILSVVKI 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00290 446 Gene3D Transferase(Phosphotransferase) domain 1 137 347 - -
Cca01g00290 446 Gene3D - 374 445 - -
Cca01g00290 446 Gene3D Phosphorylase Kinase; domain 1 19 136 - -
Cca01g00290 446 Pfam Protein tyrosine and serine/threonine kinase 63 268 IPR001245 GO:0004672|GO:0006468
Cca01g00290 446 ProSitePatterns Protein kinases ATP-binding region signature. 67 89 IPR017441 GO:0005524
Cca01g00290 446 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 10 340 - -
Cca01g00290 446 SUPERFAMILY Protein kinase-like (PK-like) 33 307 IPR011009 -
Cca01g00290 446 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 10 340 IPR044815 GO:0004674
Cca01g00290 446 ProSiteProfiles Protein kinase domain profile. 61 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00290 Cca-Chr1 3104292 3109631 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00290 49 335 Receptor kinase-like Gene Family AT3G55950 48.089 4.44e-67 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Cca01g00290 PK_Tyr_Ser-Thr 9.6e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00290 - - ccaj:109802924 675.626