Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00289 ATGGATAGCGATGAATTTGAGAGCTTTGAAATGAGAGTTGATGCAATAACAAGTTATAGTTGGAGAGTAGATAGTATGATAAGGAGTGAGACTGCGTCAAATTTGGGAGAATCCCCTCTTCCTAGTTTTGATTCCCGAGTTGACAGAGCCATAAGGAGTAGGACTCCATCGTCAATGTCAAATTTTGAATCATCCCCTCTCCATACTTTTCCACGATTATTCACCCTGCGTGAGCTTAAAGAAGCCACCAACAATTTCTCAGTTGGGAACAAGATTGGTGTTGGAAGCTTTGGTGATGTCTACAGAGGCAAACTCTTTGATGGTGGTGAGGTGGCAATCAAAAGTGATGGTTTCTGGTCAAAGGGTCTAAATAACTCTGAATTGGCCAGCTGGTCCCGTCTACCACCCCACAAGCACTTGGTTGGGGTAGTTGGGCTCTGTCAAGAGAATGGTGAGAGGTTCTTGGTGTATGAGTACATGAAGAATGCGTCCTTGTATGATCAATTGCATGACAAGCATAGCAGTGTGTTTAATTCGTGGAAAATGAGGATCAAAATTGCTTTGGATGCTTCCCGGGGAATACAACATGTTCAAAACTATGCGGTTCCATATGTTCACAGAGGAGTAATGAAGTCTTCCAACATTCTTCTTGACGCCAGTTGGACGGCGAAAGTGTCTGATTTTAGAATGACGTTTATGAAGAACACAACGGGATGTGATGAATGCATTGATCCCGAGTACGATGGTGTAAATGAGTTGACAGAAAAGAGGGATGTATATGGGTTTGGAGTTGTACTGCTTGAACTTTTAACCGGAAGGAGACCTAAATTCAACTCTCACTTACGTGGAGAGACCTTTTTAAGAATGGTGGGCGTTGCAAAGCCTGATATTTTGCTTAAAGATTTGAGGAAGTTTTGGGCTAAAGATTGGATGAAAATTTTGGATTCAAAGGTTGGAACACCGGATGTGAATGAAGCACGGGCACTGATGTTAATGGCTAATACCGCTATCGATTGTTTGAGTCGGAAAACACTAACCATGGATGCTATTGTGAAGAATTTGGAGCAGGCTCTGGCTATTTGTGCATGA 1089 0.4252 MDSDEFESFEMRVDAITSYSWRVDSMIRSETASNLGESPLPSFDSRVDRAIRSRTPSSMSNFESSPLHTFPRLFTLRELKEATNNFSVGNKIGVGSFGDVYRGKLFDGGEVAIKSDGFWSKGLNNSELASWSRLPPHKHLVGVVGLCQENGERFLVYEYMKNASLYDQLHDKHSSVFNSWKMRIKIALDASRGIQHVQNYAVPYVHRGVMKSSNILLDASWTAKVSDFRMTFMKNTTGCDECIDPEYDGVNELTEKRDVYGFGVVLLELLTGRRPKFNSHLRGETFLRMVGVAKPDILLKDLRKFWAKDWMKILDSKVGTPDVNEARALMLMANTAIDCLSRKTLTMDAIVKNLEQALAICA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00289 362 SUPERFAMILY Protein kinase-like (PK-like) 58 343 IPR011009 -
Cca01g00289 362 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 72 361 IPR044815 GO:0004674
Cca01g00289 362 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 72 361 - -
Cca01g00289 362 ProSiteProfiles Protein kinase domain profile. 86 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00289 362 Gene3D Phosphorylase Kinase; domain 1 44 159 - -
Cca01g00289 362 Pfam Protein tyrosine and serine/threonine kinase 88 276 IPR001245 GO:0004672|GO:0006468
Cca01g00289 362 Gene3D Transferase(Phosphotransferase) domain 1 160 360 - -
Cca01g00289 362 ProSitePatterns Protein kinases ATP-binding region signature. 92 114 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00289 Cca-Chr1 3070265 3071435 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00289 74 362 Receptor kinase-like Gene Family AT3G55950 48.308 4.26e-70 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Cca01g00289 PK_Tyr_Ser-Thr 2.8e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00289 - - ccaj:109802924 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00289 01 3070265 3071435 Cca05g01600 05 35297315 35299696 PCT