Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00287 ATGAAGAATGGGTCCTTGTATGATAATTTGCATGACAAGTACAACCGTGTGTTGAGTTCGTGGAAAATGAGGATCAAAATTGCTTTGGATGTTTGCCGGGGAATACAATATCTTCTTAATAATACAGTTGCACATGTTGACAAAGTAATAAAGTCTTGCAACATTCTTTTTGATGGCACTTGGACGGCGAGAGTATCTGATTTTAGATTGACGTTTGTGAAGAACAAAATGAGAGGAGTGGATTGCATTCATCCCAAGAGGAAATATGCAAATGAGTTGACGCAAGAGAGGGATGTATATGCGCTTGGAGTTGTAATGCTAGAACTTTTAACGGGAAGGAGACCTAATTACAGGTATTGGGATGATAGAGACACCTTATTAGATATGATGGGCGTTGGAGAGTCTGTTGATTGGGGATTTTTTTTATGTGAAGATTTGATGAAAATTTTGGATTTAAAGGTTAGACCACCATCGAATCTGAATGAAACAAGGGCACTACATTTAGTGGCCCGTACCGCTTTGGAGCTTATTAAAGCCATAGATAGACCAACCATGTCTCACGCTGAGCTCAAATTGGAGCAGGCTTTGGCCTTTTGTGAATGGTGA 606 0.3977 MKNGSLYDNLHDKYNRVLSSWKMRIKIALDVCRGIQYLLNNTVAHVDKVIKSCNILFDGTWTARVSDFRLTFVKNKMRGVDCIHPKRKYANELTQERDVYALGVVMLELLTGRRPNYRYWDDRDTLLDMMGVGESVDWGFFLCEDLMKILDLKVRPPSNLNETRALHLVARTALELIKAIDRPTMSHAELKLEQALAFCEW 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00287 201 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 1 200 IPR044815 GO:0004674
Cca01g00287 201 ProSiteProfiles Protein kinase domain profile. 1 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00287 201 SUPERFAMILY Protein kinase-like (PK-like) 1 165 IPR011009 -
Cca01g00287 201 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 1 200 - -
Cca01g00287 201 Gene3D Transferase(Phosphotransferase) domain 1 1 198 - -
Cca01g00287 201 Pfam Protein tyrosine and serine/threonine kinase 1 122 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00287 Cca-Chr1 3068534 3069139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00287 1 199 Receptor kinase-like Gene Family AT3G55950 43.049 9.09e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Cca01g00287 PK_Tyr_Ser-Thr 8e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00287 - - ccaj:109805796 414.846