Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00286 ATGAAAACATCACCTTCCGCCTCCGTCACCCTCTGTCTCGCCGTCGCCGCCGTGTTTTTTCTCTCTCTGCCACCCTCATTCCATGCTCTTGGCTCCGGCGCCACCCTCGCAATCTCCGACGCCTCTGCCACCGTGTGCGGCGTCGTGGCATCGGAGTCCACGCGTCGCATTGAGTGTTACCATGGAGGGAACATAACACCCATCGTTCCCAACGTTAGCTTTTCAACGATTTCCGGTGGGAGGGACTACTTCTGCGGCATCAGGTCCAGTAACTCCGATTTGCTTTGCTGGGACACAACCTCTTCCTTCGAAAGGAAACGGCTTTACAACGATAGTTCTGTTCCATTGGAGAATCTCGCCGTCGGGGATACCCACGTTTGCGCCACCGAAGTGGGTGGCGGTGCGGTGCGGTGCTGGAGAACCGGTGATACGTTTCAACTGCCATCTGGGTCTGATCAATTCGCTTCGATTTCATCTGGGTCTGGCTTCTCTTGCGGGATTTTGAAGAATGATTCTCGGGTTCGGTGCTGGGGGAACACGAATGTTTCTGAGGAGATTGAGAATAGGTTTGGGAACATGTCCATGTTGAGTCTTGTCGCGGGTGGTTCGCATGTTTGTGGGTTGAACTCAACAGGGTTTTTGGTGTGTGAAGGAAGTAACGGTTCTGGGCAAGTGGATTTTCCTCGAGGTGGGGCTTTTGAGTTTGGTGGGTTGGCACTTGGAGCTGAGCATAGTTGTGCGATTAGAGGATCGAATGGTTCCGTTGTGTGTTGGGGTGGCAATGGGAGATTCTCGGTGAATGTTACACAAGGTGTTTCCTTTGAGGGCCTTGTGTTCAATCTTCTTGTGGAGAGTGTGGTTCATATCTTGATTCTCAATCTCTATGCTCTGGCTCTGACTTCAATAATAATGAGACGGCAGAGGAGTGGAACTTCATCAACAAAGCACACAGACAGAGCTGAGGAGTTCACCCTGGCTGAGCTTGTGGCAGCCACCAACAATTTCTCACTTGAAAACAAGATTGGTGCTGGAAGCTTTGGCGTTGTGTACAAAGGCAAACTCGCGGATGGTCGCGAGGTGGCAATCAAGAGGGGAGAAACCAGTTCCAAGATGAAGAAGTTTCAAGAGAAAGAAAGTGCATTTGACTCTGAACTGGCCTTCTTGTCACGCCTACACCACAAGCACTTGGTTGGACTAGTTGGGTTCTGTGAAGAGAAAGATGAAAGGCTATTGGTGTATGAGTACATGAAGAATGGGGCGTTGTATGATCATTTGCATGACAAGAACAATGTGGAGAAGGGTAGCAGTGTGTTGAATTGGTGGAAAATAAGGATCAAAATTGCTTTGGATGCTTCCCGGGGAATAGAATATCTTCATAATTATGCAGTTCCATCTATTATTCACAGAGATATAAAGTCTTCCAACATTCTTCTTGATGCCACTTGGACGGCAAGAGTATCTGATTTTGGACTGTCGTTGATGAGTCCAGAACCTGACAGTGATTACCGACCAATGAAGGCAGCGGGAACCGTTGGATACATTGATCCTGAGTACTATGGTCTAAATGTGTTGACAGCAAAGAGTGATGTGTATGGACTTGGAGTTGTATTGCTAGAACTTTTAACGGGAAAGAGAGCTATATTCAAGTATGGGGAAGATGGAGGTACCCCATTAAGTGTGGTGGATTTTGCAGTGCCTGCTATTATGGCTGGAGAATTGGTGAAAATTTTGGATCCAAGAGTTGGACCACCGGATGTGAATGAAGCAGAGGCAGTGGAGTTGGTGGCATATACAGCTATCCATTGTGTGAATTTGGAAGGGAAAGATAGACCAACCATGGCTGACATTGTGGTAAATTTAGAAAGAGCTTTGTCTATTTGTGATAGTAGCCAAGATAACATTTCCAGTGGTACTATCTGTGTTGTTTCAGAATGA 1935 0.4755 MKTSPSASVTLCLAVAAVFFLSLPPSFHALGSGATLAISDASATVCGVVASESTRRIECYHGGNITPIVPNVSFSTISGGRDYFCGIRSSNSDLLCWDTTSSFERKRLYNDSSVPLENLAVGDTHVCATEVGGGAVRCWRTGDTFQLPSGSDQFASISSGSGFSCGILKNDSRVRCWGNTNVSEEIENRFGNMSMLSLVAGGSHVCGLNSTGFLVCEGSNGSGQVDFPRGGAFEFGGLALGAEHSCAIRGSNGSVVCWGGNGRFSVNVTQGVSFEGLVFNLLVESVVHILILNLYALALTSIIMRRQRSGTSSTKHTDRAEEFTLAELVAATNNFSLENKIGAGSFGVVYKGKLADGREVAIKRGETSSKMKKFQEKESAFDSELAFLSRLHHKHLVGLVGFCEEKDERLLVYEYMKNGALYDHLHDKNNVEKGSSVLNWWKIRIKIALDASRGIEYLHNYAVPSIIHRDIKSSNILLDATWTARVSDFGLSLMSPEPDSDYRPMKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKYGEDGGTPLSVVDFAVPAIMAGELVKILDPRVGPPDVNEAEAVELVAYTAIHCVNLEGKDRPTMADIVVNLERALSICDSSQDNISSGTICVVSE 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00286 644 Gene3D - 190 299 IPR009091 -
Cca01g00286 644 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 3 279 - -
Cca01g00286 644 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 302 640 - -
Cca01g00286 644 Gene3D Phosphorylase Kinase; domain 1 300 415 - -
Cca01g00286 644 Gene3D Transferase(Phosphotransferase) domain 1 416 638 - -
Cca01g00286 644 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Cca01g00286 644 SMART serkin_6 335 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00286 644 SUPERFAMILY RCC1/BLIP-II 19 265 IPR009091 -
Cca01g00286 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Cca01g00286 644 ProSiteProfiles Protein kinase domain profile. 335 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00286 644 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 302 640 IPR044815 GO:0004674
Cca01g00286 644 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 3 279 IPR044815 GO:0004674
Cca01g00286 644 Gene3D - 26 184 IPR009091 -
Cca01g00286 644 Pfam Protein kinase domain 336 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00286 644 SUPERFAMILY Protein kinase-like (PK-like) 312 620 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00286 Cca-Chr1 3063734 3066163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00286 304 644 Receptor kinase-like Gene Family AT3G55950 74.286 1.01e-172 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Cca01g00286 Pkinase 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00286 - - gmx:100805573 632.098