Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00282 ATGAGTAAGCTTCAGAGTGATGCTTTGCGAGAGGCCATCTCAGGAATCATGGCCGATTCCAAGGAGAAGAATCGCAAATTTGTGGAGACCATTGAGCTCCAGATTGGATTGAAGAACTACGATCCACAAAAGGACAAGCGTTTCAGCGGCTCTGTCAAGTTGCCCCACATCCCTCGCCCCAAGATGAAAATTTGCATGCTTGGTGATGCTCAACATGTTGAAGAGGCGGAAAAGATTGGATTGGACTGGATGGATGTCGAAGCCCTGAAGAAGCTGAATAAAAATAAGAAGTTGGTGAAGAAGCTAGCTAAAAAATACCATGCCTTTTTAGCTTCTGAAGCAGTCATTAAGCAGATTCCACGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGCATGTATTTGCTTTTATTTTTTTCCTTGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTAATGAGTCCAAGGCTATGGTCAAATTTCAACTTAAGAAGGTGCTCTGCATGGGAGTAGCTGTGGGCAATGTTAGCATGGAGGAAAAGCAAATCTTCCAAAATGTGCAATTGAGTGTTAACTTCTTGGTATCCTTGTTGAAAAAGAACTGGCAGAATGTTAGGTGCTTGTATCTGAAGAGTACCATGGGAAAATCTTACCCTCACAAGATCTCTCTCTCCTTTCGCTTTAGAGGGTCCAACTTGCTTCCAGATCTTGCGCCGATTTGGATCACTCTTTTGACTCTCTGTCTTCCAATTCTATCGCCGCCGCAGATCCGTTCTCCGATCCACGCCGTCATGGCGGCCGCCAACGCTCCGATTGCCATGCGAGAACCTCTCACCTTGCCGAGCATTGGCATAAATCCGCAGTTCATCACCTTCACGCATGTGACGATGGAGTCCGATAAGTATATATGCGTTCGAGAAACGGCTCCGCAGAATAGTGTCGTTATCATTGATATGAACATGCCGATGCAGCCTTTGAGGAGGCCTATCACCGCAGATTCCGCTCTTATGAATCCGAATTCCAGAATCCTTGCTCTGAAAGCTCAACTACAAGGAACAACTCAAGATCACCTACAAATTTTTAACATTGAAATGAAAGCAAAGATGAAATCTTATCAGATGCCTGAGCAGGTGGTCTTTTGGAAGTGGATTACCCCCAAGTTGTTGGGTCTTGTGACACAGACCTCTGTATACCATTGGTCAATCGAAGGTGACTCTGAACCCGTGAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAATCAAATAATTAATTATCGATGTGATCCATCTGAAAAATGGTTGGTCTTGATTGGTATTGCTCCAGGTTCCCCTGAGAGGCCACAATTGGTTAAAGGAAACATGCAACTCTTCTCTGTCGATCAACAGCGCAGCCAGGCTCTTGAAGCACATGCTGCAGCATTTGCTCAATTTAAAGTTCCTGGGAATGAAAATCCTTCTACTTTAATTTCTTTTGCCACTAAGACACTTAATGCTGGTCAAATTATATCCAAGTTGCATGTTATTGAGTTGGGTGCACAGCCAGGGAAGCCATCATTTACAAAGAAACAAGCAGATCTTTTCTTTCCCCCAGATTTTGCTGATGATTTTCCAGTCGCCATGCAGATATCCCACAAATACAATTTGATTTATGTGATTACGAAACTTGGTCTCCTATTTGTCTATGATTTGGAGACAGCTACAGCTGTATATAGGAACAGAATAAGTCCAGATCCTATATTTTTGACATCAGAAGCTACATCAGTGGGAGGCTTTTATGCCATTAACAGGAGAGGCCAGGTGTTATTGGCTACTGTTAATGAGCAAACGATTGTGAATTTTGTCAGTGGTCAATTAAACAATTTGGAGCTAGCAGTTAATCTCGCCAAGCGAGGAAATCTTCCTGGGGCTGAGAAACTGGTGGTAGAACGTTTCCATGAACTGTTTGCCCAAACAAAGTATAAAGAAGCAGCTGAGCTTGCTGCTGAGTCTCCACAAGGAATCCTTCGGACACCTGATACAGTTGCCAAATTTCAGAGTGTTCCTGTGCAAGCTGGGCAAACTCCTCCACTGTTGCAGTATTTTGGAACACTTCTAACTAGAGGAAAGCTGAATGCCTTTGAGTCATTAGAATTGTCACGGTTGGTTGTGAACCAGAACAAGAAAAATCTTTTGGAGAATTGGTTGGCAGAGGACAAGCTTGAATGCAGTGAAGAGCTAGGAGATCTTGTAAAGactgtggacaatgatcttgctttaaaaatatacatcaaagccagagctactccaaaagttgttgctgcttttgctgagagaagagagtttgacaagattctgatatactctaagcagGTTGGGTACACACCTGATTATCTCTTCCTTTTGCAAACAATTCTCCGGACCGATCCTCAGGGTGCTGTTAATTTTGCATTAATGATGTCACAAATGGAGGGAGGTTGCCCAGTTGATTACAATACCATAACTGATCTGTTTCTTCAGAGAAACCTGATCCGTGAGGCAACAGCTTTTCTCCTAGATGTTTTGAAGCCAAATCTACCAGAACATGGTTTCCTTCAAACAAAGGTGTTGGAGATAAATCTAGTTACTTTCCCAAATGTTGCTGATGCAATTTTGGCTAACGGCATGTTCAGCCATTATGATCGTCCTCGTGTTGCCCAACTTTGTGAAAAAGCTGGTCTTTATGTGCGAGCTTTGCAAcattacacagagttgccagatataaaacgtgtgattgtaaatacacatgcaattgagcctcagtcacttgttgaattttttggtactctgtcacgagaatgggcattagagtgcatgaaagacctattgctggtcaatcttagaggcaacctacagattattgtacaggttgctaaagaatattgtgaacaattaggcgttgatgcttgcataaagctttttgagcagttcaggtcatatgaagggttatactttttcttgggatcatatttgagctccagTGAGGATCCTGACATTCACTTTAAGTACATTGAGGCAGCAGCAAAGACTGGACAAATCAAAGAGGTTGAGCGTGTGACTAGAGAATCAAGTTTCTATGATCCTGAAAAAACGAAGAACTTTCTAATGGAAGCTAAGCTACCAGATGCTCGACCTCTGATAAATGTTTGTGACCGGTTTGGATTTGTTCCAGATCTAACACACTATCTATACACAAGCAACATGCTTCGCTACATTGAAGGTTATGTTCAGAAGGTGAACCCAGGGAATGCTCCATTAGTTGTTGGGCAGCTTCTAGATGATGAGTGTCCAGAAGATTTTATCAAAGGCTTGATTCTCTCTGTTCGTTCATTATTGCCAGTGGAGCCCCTTGTGGAGGAGTGTGAGAAGAGGAATCGGCTTCGTTTGCTCACACAGTTTTTGGAACATCTGGTAAGTGAGGGAAGCCAGGATGTACATGTTCACAATGCACTGGGTAAAATCATCATTGATAGCAACAACAATCCAGAACATTTTCTCACTACCAACCCATACTATGAttctcgagttgtgggcaaatattgtgagaaacgtgatcccaccttggcagttgtggcttataggcgtggacaatgtgacgacgaacttattaatgtgacaaacaaaaattctttgttcaaactacaagcaagatatgttgttgagaggatggatggtgatctttgggagaaagtgcttaaccctgataatgcgtacagaaggcaacttattgatcaggttgtgtctacagctctgcctgaaagcaagaGCCCTGAACAAGTATCTGCAGCTGTTAAGGCTTTCATGACTGCTGATCTACCTCATGAATTGATTGAGCTTCTAGAGAAGATAGTGCTTCAGAATTCTGCATTCAGTGGGAACTTTAATCTGCAGAATCTGCTTATTTTAACGGCGATAAAGGCTGATCCCTCCAGAGTTATGGATTATGTTAACAGACTGGATAATTTTGATGGGCCTGCAGTTGGAGAAATGGCTGTTGAAGCTCAATTATATGAGGAAGCATTTGCAATTTTCAAGAAGTTCAACTTAAATGTTCAAGCAGTCAATGTCTTGCTAGATAATATTCATAGCATTGATAGAGCGGTGGAGTTTGCTTTCCGAGTTGAAGAAGATGCTGTTTGGAGTCAGGTGGCCAAGGCTCAACTAAGGGAAGGGCTAGTAAGTGATGCAATTGAGTCATTTATTAGAGCAGATGATGCCACACAGTTTTTGGATGTTATCCGTGCTGCTGAAGATGGCAATGTTTACCATGACTTGGTGAAATACTTGCTGATGGTAAGGCAGAAGACAAAAGAACCCAAGGTGGATAGTGAGCTCATTTATGCATATGCAAAGATCGATAGGCTCAGTGAAATTGAGGAGTTCATTCTTATGCCAAATGTAGCCAATCTTCAAAATGTTGGTGACCGATTGTATGATGAAGAACTATATGAGGCTGCCAAAATCATATTTGCCTTTATATCCAACTGGGCCAAGTTAGCAGTTACACTTGTGAAGTTGAAACAATTCCAAGGTGCAGTTGATGCAGCAAGGAAAGCTAACAGCTCAAAAACATGGAAGGAAGTTTGCTTCGCATGTGTTGATGCAGAGGAGTTCCGTTTGGCCCAGATATGTGGACTTAACATTATTATTCAGGTGGATGACTTGGAAGAGGTCAGTGAATATTACCAAAATAGAGGTTGCTTCAATGAGTTAATATCCCTCATGGAGAGTGGTTTAGGATTAGAACGGGCACATATGGGCATCTTCACCGAGTTAGGAGTTCTGTATGCCAGATACCGTCCTGAGAAGCTTATGGAGCATATCAAACTCTTTTCAACCCGCCTCAATATTCCAAAACTCATAAGAGCATGTGATGAACAACAACATTGGAAGGAGCTGACCTATCTGTACATCCAATATGACGAGTTTGATAATGCTGCTACAACCATCATGAACCATTCACCCGAAGCATGGGATCACATGCAATTCAAAGATGTTGTTGTCAAAGTTGCTAATGTGGAGTTGTATTACAAGGCTGTTCACTTCTATTTACAAGAGCATCCAGATCTTATCAATGATGTTCTGAATGTCCTTGCACTTCGTGTTGATCATGCACGTGTTGTTGACATCATGCGAAAGGCTGGTCATCTCCGTCTTGTCAAGCCATACATGGTTGCTGTTCAGAGCAACAACGTGTCTGCTGTTAATGAAGCCCTGAATGAAATATATGTTGAGGAGGAGGACTATGATAGATTGCGTGAGTCAATTGATTTGCACGATAACTTTGACCAAATAGGCCTTGCACAGAAGATTGAAAAGCATGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATTTACAAGAAGGCAGGTAGATGGAAGCAGTCCATTGCCTTGTCAAAGAAGGATAACCTTTACAAAGATGCCATGGAGACGGCGTCTCAATCTGGTGACCGTGAACTTGCTGAGGAGTTACTTGTTTATTTCATTGATCAGGGAAAGAAGGAATGCTTTGCCTCGTGTCTATTTGTCTGCTATGATTTGATCCGGGCAGACATTGTTCTTGAATTGGCTTGGATGCACAATATGATTGATTTCGCCTTCCCATATCTATTGCAGTTTATCCGTGAGTACACTGGCAAAGTTGATGAACTGGTGAAGGACAAAATTGAAACACAGATCCAAGTGAAGGCTAAAGAGCAAGAAGAGAAGGAAGTAATTGCTCAACAGAATATGTATGCTCAGTTGTTGCCTCTTGCTTTGCCCGCACCACCAATGCCTGGAATGGGAGGAGGCTTTGCTCCTCCCCCTCCAATGGGTGGATTGGGAATGCCTCCAATGCCTCCTTTTGGTATGCCACCCATGGGCAGCAGCTACTGA 5907 0.3816 MSKLQSDALREAISGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGMYLLLFFSLFPTLVTHQETLESKVNESKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYPHKISLSFRFRGSNLLPDLAPIWITLLTLCLPILSPPQIRSPIHAVMAAANAPIAMREPLTLPSIGINPQFITFTHVTMESDKYICVRETAPQNSVVIIDMNMPMQPLRRPITADSALMNPNSRILALKAQLQGTTQDHLQIFNIEMKAKMKSYQMPEQVVFWKWITPKLLGLVTQTSVYHWSIEGDSEPVKMFERTANLANNQIINYRCDPSEKWLVLIGIAPGSPERPQLVKGNMQLFSVDQQRSQALEAHAAAFAQFKVPGNENPSTLISFATKTLNAGQIISKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYNLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEATSVGGFYAINRRGQVLLATVNEQTIVNFVSGQLNNLELAVNLAKRGNLPGAEKLVVERFHELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRVAQLCEKAGLYVRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQVAKEYCEQLGVDACIKLFEQFRSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESSFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTSNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDGDLWEKVLNPDNAYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEMAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIHSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDGNVYHDLVKYLLMVRQKTKEPKVDSELIYAYAKIDRLSEIEEFILMPNVANLQNVGDRLYDEELYEAAKIIFAFISNWAKLAVTLVKLKQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVVVKVANVELYYKAVHFYLQEHPDLINDVLNVLALRVDHARVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGDRELAEELLVYFIDQGKKECFASCLFVCYDLIRADIVLELAWMHNMIDFAFPYLLQFIREYTGKVDELVKDKIETQIQVKAKEQEEKEVIAQQNMYAQLLPLALPAPPMPGMGGGFAPPPPMGGLGMPPMPPFGMPPMGSSY 1968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00282 1968 Gene3D - 144 221 - -
Cca01g00282 1968 Gene3D - 1 118 - -
Cca01g00282 1968 SUPERFAMILY Ribosomal protein L1 3 222 IPR023674 -
Cca01g00282 1968 PANTHER CLATHRIN HEAVY CHAIN 268 1967 - -
Cca01g00282 1968 PIRSF CHC 270 1946 IPR016341 GO:0016192|GO:0032051|GO:0071439
Cca01g00282 1968 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1555 1701 IPR000547 GO:0006886|GO:0016192
Cca01g00282 1968 SUPERFAMILY ARM repeat 1168 1335 IPR016024 -
Cca01g00282 1968 SUPERFAMILY ARM repeat 724 1060 IPR016024 -
Cca01g00282 1968 Pfam Ribosomal protein L1p/L10e family 22 218 IPR028364 -
Cca01g00282 1968 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1114 1253 IPR000547 GO:0006886|GO:0016192
Cca01g00282 1968 Gene3D - 1809 1904 - -
Cca01g00282 1968 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 967 1109 IPR000547 GO:0006886|GO:0016192
Cca01g00282 1968 Pfam Clathrin-H-link 636 701 - -
Cca01g00282 1968 Coils Coil 1891 1911 - -
Cca01g00282 1968 SUPERFAMILY ARM repeat 1463 1798 IPR016024 -
Cca01g00282 1968 Pfam Clathrin, heavy-chain linker 611 634 IPR015348 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Cca01g00282 1968 PANTHER CLATHRIN HEAVY CHAIN RELATED 268 1967 - -
Cca01g00282 1968 SUPERFAMILY ARM repeat 612 767 IPR016024 -
Cca01g00282 1968 Pfam Clathrin propeller repeat 287 323 IPR022365 -
Cca01g00282 1968 Pfam Clathrin propeller repeat 421 464 IPR022365 -
Cca01g00282 1968 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1409 1550 IPR000547 GO:0006886|GO:0016192
Cca01g00282 1968 SUPERFAMILY Clathrin heavy-chain terminal domain 272 610 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Cca01g00282 1968 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1704 1847 IPR000547 GO:0006886|GO:0016192
Cca01g00282 1968 SMART CLH_2 1260 1405 IPR000547 GO:0006886|GO:0016192
Cca01g00282 1968 SMART CLH_2 967 1109 IPR000547 GO:0006886|GO:0016192
Cca01g00282 1968 SMART CLH_2 1409 1550 IPR000547 GO:0006886|GO:0016192
Cca01g00282 1968 SMART CLH_2 1704 1863 IPR000547 GO:0006886|GO:0016192
Cca01g00282 1968 SMART CLH_2 1114 1253 IPR000547 GO:0006886|GO:0016192
Cca01g00282 1968 SMART CLH_2 1555 1701 IPR000547 GO:0006886|GO:0016192
Cca01g00282 1968 SMART CLH_2 818 960 IPR000547 GO:0006886|GO:0016192
Cca01g00282 1968 Coils Coil 1744 1764 - -
Cca01g00282 1968 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1260 1405 IPR000547 GO:0006886|GO:0016192
Cca01g00282 1968 CDD Ribosomal_L1 9 222 IPR028364 -
Cca01g00282 1968 Pfam Region in Clathrin and VPS 968 1107 IPR000547 GO:0006886|GO:0016192
Cca01g00282 1968 Pfam Region in Clathrin and VPS 1260 1398 IPR000547 GO:0006886|GO:0016192
Cca01g00282 1968 Pfam Region in Clathrin and VPS 1414 1548 IPR000547 GO:0006886|GO:0016192
Cca01g00282 1968 Pfam Region in Clathrin and VPS 1559 1698 IPR000547 GO:0006886|GO:0016192
Cca01g00282 1968 Pfam Region in Clathrin and VPS 824 957 IPR000547 GO:0006886|GO:0016192
Cca01g00282 1968 Pfam Region in Clathrin and VPS 1707 1846 IPR000547 GO:0006886|GO:0016192
Cca01g00282 1968 Pfam Region in Clathrin and VPS 1117 1250 IPR000547 GO:0006886|GO:0016192
Cca01g00282 1968 SUPERFAMILY ARM repeat 1320 1462 IPR016024 -
Cca01g00282 1968 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 818 964 IPR000547 GO:0006886|GO:0016192
Cca01g00282 1968 Gene3D Tetratricopeptide repeat domain 1324 1463 IPR011990 GO:0005515
Cca01g00282 1968 Gene3D Tetratricopeptide repeat domain 1169 1323 IPR011990 GO:0005515
Cca01g00282 1968 Gene3D Tetratricopeptide repeat domain 1464 1803 IPR011990 GO:0005515
Cca01g00282 1968 Gene3D - 265 644 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00282 Cca-Chr1 2946797 2963544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00282 1 218 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 85.780 2.37e-108 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00282 K04646 - gmx:547986 3198.68