Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00280 ATGGGAGATAAAAGGCTCAGAAATCATGGAAGAAACTTTAGAATGGTTTCCATTGTGACCATGGAAAATTACTATGATTCTGGCTGGCACATGGGCACAAGCTGGCCTCAATGCAGTGATCATTCTTCTTCCTTTGCAATACCTGCACAAATACTACCTCATGTTTCTGATTCTGCCTCTCTTCAATTTGGTGAGTTCCACTCATGGCCACTACCCCTTGAAGGGGTTGCAGAAGAGAGAGCAATAAGTGCTTCCAAGAGTCACAGTCAAGCCGAGAAACGGCGAAGAGATAGGATCAATGCACAGCTTGCAACTCTCAGAAAACTCATTCCTAAGTCTGACAAGATGGATAAGGCAGCTTTACTAGGAAGTGTGATAGACCAAGTGAAAGATCTAAAGAGAAAGGCCATGGATGTTAGCAGAGCCTTCACAGTTCCAACTGAAATTGATGAAGTATCAATTGACTATGACCATGTTCAAGATGAAAGCTGCACCAAAGTGAGCAAATTGAAGGAAAATATGGTCATCAAAGCTTCTGTTTGCTGTGATGATAGACCAGAATTGTTCCCTGAACTCATCCAAGTCCTCAAAGGATTGAGACTCACAGCAGTTAAAGCTGAGATAGCCAGTGTTGGTGGAAGGATTAAAAGCATATTGGTGCTTTGTTCTAAGGACAATGAAGAGGGTGTTTGCCTTACCACTCTCAAACAGTCCCTCAAATCTGCTGTGACCAAAATTGCCTCATCAAACATGGCATCTAATTGTCCCACTAGAAGTAAGAGGCAGAGATTCTTCTTGCCTTCTCATTGTCTAGAGTAA 819 0.4249 MGDKRLRNHGRNFRMVSIVTMENYYDSGWHMGTSWPQCSDHSSSFAIPAQILPHVSDSASLQFGEFHSWPLPLEGVAEERAISASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVIDQVKDLKRKAMDVSRAFTVPTEIDEVSIDYDHVQDESCTKVSKLKENMVIKASVCCDDRPELFPELIQVLKGLRLTAVKAEIASVGGRIKSILVLCSKDNEEGVCLTTLKQSLKSAVTKIASSNMASNCPTRSKRQRFFLPSHCLE 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00280 272 CDD bHLH_AtAIG1_like 78 157 - -
Cca01g00280 272 Pfam Helix-loop-helix DNA-binding domain 86 132 IPR011598 GO:0046983
Cca01g00280 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 135 IPR036638 GO:0046983
Cca01g00280 272 Gene3D - 77 141 IPR036638 GO:0046983
Cca01g00280 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 132 IPR011598 GO:0046983
Cca01g00280 272 CDD ACT_UUR-ACR-like 179 214 - -
Cca01g00280 272 PANTHER TRANSCRIPTION FACTOR BHLH30 49 270 IPR045847 GO:0003700|GO:0006355
Cca01g00280 272 PANTHER TRANSCRIPTION FACTOR BHLH51 49 270 - -
Cca01g00280 272 SMART finulus 89 138 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00280 Cca-Chr1 2926741 2928243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00280 21 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 41.667 4.18e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca01g00280 HLH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00280 - - gmx:100799687 498.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00280 01 2926741 2928243 Cca05g01611 05 35517510 35519672 PCT