Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00278 ATGTCGAGCCCGGATTCTCGAACGTTGAATTGGCACTACACGGAACTGGATGACAGAGACCTCCAGATCCGAGGCAGAACCTTGTTCTTCGTCATCGTGCTCTTTGCCATTATCCTCCTGGTCACTGTTCTCTTCATCTACACGCGCTGGGTCTGCCGATTCCAGGGCCGCCTCCCCACCACCCACGCGCCGCCGCTCGCACCGCCGCAAGGACTTCACCCCGCCGCCATCAAGAAGCTGCCGATAATCCTGCACCACGCGCCGTCGGACCACGAGGAGAGCGCGTGGGAGGAGAGCGAGTGCTGCATCTGCCTGGGCGAGTTCAGAGACGGCGAGAAAGTTAAGGTTTTGCCCGGGTGCGACCATTATTTCCACTGCGAGTGTGTTGATAAGTGGCTTATTCATCACTCTAGTTGCCCTCTCTGCAGAGCTTCTCTCAAGGTTGAATCTTCCTTCCCAAAGATTTTGATTCAAGAACCACCCCTTAGAATTGACTTCCAGTTCTAG 507 0.5562 MSSPDSRTLNWHYTELDDRDLQIRGRTLFFVIVLFAIILLVTVLFIYTRWVCRFQGRLPTTHAPPLAPPQGLHPAAIKKLPIILHHAPSDHEESAWEESECCICLGEFRDGEKVKVLPGCDHYFHCECVDKWLIHHSSCPLCRASLKVESSFPKILIQEPPLRIDFQF 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00278 168 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 158 IPR044675 -
Cca01g00278 168 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Cca01g00278 168 PANTHER RING-H2 FINGER PROTEIN ATL66 2 158 - -
Cca01g00278 168 SMART ring_2 101 142 IPR001841 -
Cca01g00278 168 Pfam Ring finger domain 100 143 IPR001841 -
Cca01g00278 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 149 IPR013083 -
Cca01g00278 168 SUPERFAMILY RING/U-box 91 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00278 Cca-Chr1 2910008 2911703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00278 6 151 C3H Transcription Factor Family AT3G11110 44.000 4.07e-35 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00278 - - gmx:100803278 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00278 01 2910008 2911703 Cca05g01614 05 35547631 35548438 PCT