Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00277 ATGAAGGGTTATGAGCCCCGTTCAAGCTCTTCATGTGCAGCTTGCAAGTTATTGAAGAGAAGATGCATACCCAATTGTATTTTTGCACCGTACTTCAGGTCTGATGAGTGCAAGAAGTTTGCCAAGGTGCACAAGGTATTTGGAGCGAGCAATGTGAGCAAGATCCTGATTGAAGTGCCAGAGGAGCAGAGAGAGGACACGGTGAATTCTCTGGCATATGAGGCTGAGGCAAGGCTGAGAGATCCGGTTTATGGATGCATTGGTGCCATAGCTCTGTTGCAAAGGAAGATGGTGGAGCTTCAACATGACCTGGCCATTGCCAAGGATCGTCTTGCTCGTTGTCATGCTACTGCTTGTGCTGCTGCTACCATCCCTTCTCCTGATATCTTGCATGCACATGTTAGCTTGCCCCCATTCCCTGACTTTTCCACTAGCAGCGATTTCAATGATATCTTCTGCCACAGTTCTTCATCTCAATTATTGAGCCGACATGAAACGGTGGATGATTTCAATCAAATCCCATATATATTTTAA 534 0.4607 MKGYEPRSSSSCAACKLLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARCHATACAAATIPSPDILHAHVSLPPFPDFSTSSDFNDIFCHSSSSQLLSRHETVDDFNQIPYIF 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00277 177 Coils Coil 90 110 - -
Cca01g00277 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 172 - -
Cca01g00277 177 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Cca01g00277 177 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Cca01g00277 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 1 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00277 Cca-Chr1 2902461 2903725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00277 1 142 AS2 family AT3G11090 68.276 9.91e-65 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca01g00277 LOB 1.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00277 - - gmx:100791250 323.939