Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00276 ATGGTGCGTGTCAAAGAAGCTGTGGTAATAACCCCATCGGAGCCCACACCCAACACTATCCTCCAACTCTCCGCTTTAGACTCACAACTCTTTCTGCGCTTCACCATAGAGTATCTCCTCGTTTACAGGCCCGCTCCGGGAATGGACCGGGCCTCCACCACGGCCCGTTTGAAAGCCGCATTAGCCAAAGCGCTCGTTCCTTATTACCCATTCGCCGGGAGAGTGCGGGCCCGCTCCGAGGGGCCGGGCCTCGAGGTTCTCTGCCGGGCCCAGGGCGCCGTCTTCATCGAAGCCTCCTCAGACCGCTACACCGTCAACGATTTCCACAAGGCCCCCAAAACCGTTACGCAATGGAGAAGTCTCTTGTCGCTCTACGTCACCGACGTTCTCAAAGGCTCGCCGGTTCTTGTTTTTCAGCTGACGTGGCTGGCCGACGGGGCcgccgccgtcggcgtcgggatcaaccactgcatctgcgacggcatcggcagcgCGGAGTTTCTGAATCACCTCTCCGATTTGGCCTCCGGGAAGCGCGATCTGAAACCGAAGGCGGTTTGGGATCGGCACCTTCTGAATCAAAACGGGACTCGGGCGAACCCGGCTCGTCACCCCGAGTTCGCGCGGGTTCCGGATCTATGCGGGTTCATGAACCGGGTGACGAGCGGGCTTAAACCGACTTGCATTGTGTTGGACGAGAGACGCATCGAGGCGCTTAAAAGCGCGTGCGGAGGAGGAACATCGTTCGAGGTTGTGGCTGCGCACGTGTGGAGGAGTTGGGCTCGGGCGTTGGGGTTTCCGAGGAACCAGACGGTGAAGCTTCTGTTCAGCGTGAACGTGCGGAAGCGCGTGAAGCCGGGATTACCGGAGGGGTATTATGGGAACGCGTTTGTGTTGGGGTGCGCGCAGAGCAGCGCGTGGGAGTTGGGGGAGAGAGGGGTGGGGTTCGGGTGGGGTCTGGTGAAGCGTGCGAAGGAGAGGGTGGACAGCGAGCACGTGCGGAGCGTGGTTGAGTTGGTGTCGGAGTCGAGGGCGAGTCCTGAGCCGGTGGGCGTGTTGATTCTGTCGCAGTGGTCGAGGCTTGGTTTGGAGAGTGTCGAAATGGGAATGGGAATGGGGAAGGCTGTGCATGTGGGTCCCATTTGCTCTGATAGGTACTGTTTGTTTCTCCCAGTCACCGCTGAACGCCACAGCGTTAAGGTCGTCCTCGCTGTTCCCTCCCTCGCCGTTTACAATTTTCACCGCTTTCTCCGCCAATCCCATTCCTAG 1269 0.5697 MVRVKEAVVITPSEPTPNTILQLSALDSQLFLRFTIEYLLVYRPAPGMDRASTTARLKAALAKALVPYYPFAGRVRARSEGPGLEVLCRAQGAVFIEASSDRYTVNDFHKAPKTVTQWRSLLSLYVTDVLKGSPVLVFQLTWLADGAAAVGVGINHCICDGIGSAEFLNHLSDLASGKRDLKPKAVWDRHLLNQNGTRANPARHPEFARVPDLCGFMNRVTSGLKPTCIVLDERRIEALKSACGGGTSFEVVAAHVWRSWARALGFPRNQTVKLLFSVNVRKRVKPGLPEGYYGNAFVLGCAQSSAWELGERGVGFGWGLVKRAKERVDSEHVRSVVELVSESRASPEPVGVLILSQWSRLGLESVEMGMGMGKAVHVGPICSDRYCLFLPVTAERHSVKVVLAVPSLAVYNFHRFLRQSHS 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00276 422 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 3 416 - -
Cca01g00276 422 Pfam Transferase family 1 413 - -
Cca01g00276 422 Gene3D - 219 418 IPR023213 -
Cca01g00276 422 Gene3D - 1 209 IPR023213 -
Cca01g00276 422 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 3 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00276 Cca-Chr1 2893081 2894695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00276 2 417 Monolignol Biosynthesis Gene Families AT5G48930 28.046 5.17e-44 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00276 - - gmx:100803812 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00276 01 2893081 2894695 Cca05g01616 05 35579492 35581246 PCT