Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00269 ATGAGCAAAAACTGGAAATTCAGCTTCAGGGATCCTGGGGGAGTTCTGTTCCTTCTAGCGTTGTGTTTGTTGTTTCAGAATTTTGGTTCGTGCTGCTCTTTGAATGAAGAAGGTAAAGTTCTTTTGAAGTTCAAGCATAGAATAGTAAAAGACCCTTTTGGTGCTTTGTTGAGTTGGGTCGACGATGAAGTAGCAGTTAGCCCCTGTAATTGGTTTGGAGTTGAGTGCTCTGATGGAAGAGTGGTGGTCTTGAATTTGAAAGACCTTAGTCTCAAAGGAGATCTGGTACCCGAGCTTGCGAACCTTGTTCACATAAAGTCCTTAATTTTGCGGAACAATTCTTTTTATGGAGTCATTCCTGAAGGAATTGCACACTTGAATGAATTGGAGGTTTTGGATTTGAGCTACAACAATTTCAGTGGACCGCTGTCTACAGATCTTGGGAATAATGTTTCACTAACAATTCTTTTGCTGGACAACAACGATCAAGTAGATGAAAACCAACTAAGCAGTGCAAATAAAGAGCCAGCTTGTACAAGATCTGTCACACGGCATGTTGGCCAAAATAGAAAAGGTCCTCGGAGGCTACTGCAATCTCCTACTCGTGATAGTCCTTATAATCGCGCCACTATTTTTCCTGATACTTCCCCTGACCGAAATAATTCTGCTTCTCCTTCTCCTCTGCCGGAACCAGAAGGCTCATTACCAAAATCTAAAAGTAACAAATCAAATAATCATTCAGTTGTCATTTTGGCTGGAGTTATAGGTGGTGCTGTATTTCTTTTCATTTCAATCATTGTCCTATATCTCTGCAAAACAAACAAGGTAGCTACCGTAAAACCTTGGGCCACAGGATTAAGCGGACAGCTTCAGAAGGCATTTGTAACAGGTGTGCCGAAGCTAAAGAGATCAGAGCTTGAAGCAGCATGTGAAGATTTTAGTAACGTAATCGGCACTTCATCCATTGGTACAGTGTATAAAGGGACTTTATCTAGTGGTGTTGAAATAGCTGTGGCATCTGTTGCAGTGAAATCATCCAAAGATTGGTCAAAGACATCAGAATCCGAATTTAGGAAAAAGATAGATACATTATCAAAAGTGAACCACAAGAATTATGTAAATCTTCTTGGACATTGTGAAGAAGATGAGCCTTTCACCAGAATGATGGTTTTTGAATATGCTCCAAATGGAACACTCTTTGAGCATTTACACATAAAAGAAGCTGAGCACTTGGATTGGGTAACAAGACTTAGAGCTGCCATGGGCATGGCTTACTGCCTACAACATCTGCACCAGATGGACCCGCCTTTGACCCTAAGCAACCTGAACTCGTCGTCCGTCCAACTCACCGATGATTACGCCGCCAAAATCGCAGATCTTAGTTTCTCAAATGAAATAGCTTCAGCTGTGATAAAATCTACTGCTGGAAAACATACCGACACAACACTAGCATGTAATGTTTACAGCTTCGGTGTTATTCTATTAGAAATGGTAACTGGAAGACTCCCTTATTCAGTGAACAATGATGGCTCACTTGATGACTGGGCTTCACGCTATTTACAAGGGGACCAACCCCTCAGAGAAATGGTGGATCCAACTCTAGCATCATTCCAAGAACAACAGGTGGAGCAAGTTGCTGCTTTGATTAAATCTTGTGTCCATCCTGATCAAAAGCAAAGACCAACAATGAAGGAAGTTTGTGTGAGATTAAGAGAGATAACAAAAATAACACCTGAAGCAGCTACTCCAAAACTTTCTCCACTTTGGTGGGCAGAGCTTGAGATTTCTTCTGTAGATGCAAGCTGA 1806 0.4142 MSKNWKFSFRDPGGVLFLLALCLLFQNFGSCCSLNEEGKVLLKFKHRIVKDPFGALLSWVDDEVAVSPCNWFGVECSDGRVVVLNLKDLSLKGDLVPELANLVHIKSLILRNNSFYGVIPEGIAHLNELEVLDLSYNNFSGPLSTDLGNNVSLTILLLDNNDQVDENQLSSANKEPACTRSVTRHVGQNRKGPRRLLQSPTRDSPYNRATIFPDTSPDRNNSASPSPLPEPEGSLPKSKSNKSNNHSVVILAGVIGGAVFLFISIIVLYLCKTNKVATVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGTSSIGTVYKGTLSSGVEIAVASVAVKSSKDWSKTSESEFRKKIDTLSKVNHKNYVNLLGHCEEDEPFTRMMVFEYAPNGTLFEHLHIKEAEHLDWVTRLRAAMGMAYCLQHLHQMDPPLTLSNLNSSSVQLTDDYAAKIADLSFSNEIASAVIKSTAGKHTDTTLACNVYSFGVILLEMVTGRLPYSVNNDGSLDDWASRYLQGDQPLREMVDPTLASFQEQQVEQVAALIKSCVHPDQKQRPTMKEVCVRLREITKITPEAATPKLSPLWWAELEISSVDAS 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00269 601 MobiDBLite consensus disorder prediction 167 242 - -
Cca01g00269 601 Gene3D Transferase(Phosphotransferase) domain 1 394 583 - -
Cca01g00269 601 Gene3D Phosphorylase Kinase; domain 1 283 393 - -
Cca01g00269 601 MobiDBLite consensus disorder prediction 167 186 - -
Cca01g00269 601 MobiDBLite consensus disorder prediction 200 228 - -
Cca01g00269 601 Pfam Leucine rich repeat 104 162 IPR001611 GO:0005515
Cca01g00269 601 Pfam Protein tyrosine and serine/threonine kinase 313 569 IPR001245 GO:0004672|GO:0006468
Cca01g00269 601 PANTHER BNAA09G55080D PROTEIN 1 601 - -
Cca01g00269 601 PANTHER PROTEIN MALE DISCOVERER 2 1 601 - -
Cca01g00269 601 Pfam Leucine rich repeat N-terminal domain 35 77 IPR013210 -
Cca01g00269 601 Gene3D Ribonuclease Inhibitor 32 178 IPR032675 -
Cca01g00269 601 SUPERFAMILY Protein kinase-like (PK-like) 294 570 IPR011009 -
Cca01g00269 601 ProSiteProfiles Protein kinase domain profile. 311 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00269 601 SUPERFAMILY L domain-like 34 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00269 Cca-Chr1 2844360 2848433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00269 17 572 Receptor kinase-like Gene Family AT5G16000 27.863 1.40e-46 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Cca01g00269 PK_Tyr_Ser-Thr 1.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00269 - - gmx:100784541 932.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00269 01 2844360 2848433 Cca05g01621 05 35633222 35637660 PCT