Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00264 ATGGCTCCGAACCTGGAATGTCGTATGTACGAGGCGAAGTACCCGGAGGTGGACATGGCGGTGATGATTCAGGTGAAGAACATCGCGGACATGGGTGCGTACGTCTCGCTTCTCGAGTACAACAACATCGAGGGCATGATCTTGTTCTCCGAGCTCTCCCGCCGTCGGATTCGCAGCGTCAGCAGCCTCATCAAGGTCGGCCGCATCGAGCCCGTCATGGTCCTCCGTGTCGACAAGGAGAAAGGTTACATCGATCTCAGCAAGCGTAGGGTCTCCGAAGAAGACATCCAAGCCTGCGAAGAACGCTACAACAAGAGCAAATTAGTTCACAGCATCATGCGCCACGTCGCTGAAACCCTCAACATCGATTTGGAGGAGCTCTATATTCACATCGGATGGCCTTTATATCGCAAATATGGTCATGCTTTTGAGGCTTTCAAAATAATTGTTACTGATCCTGATACTGTTTTGAATACTCTTACCCGTGAAGTCAAGGAAGTTGGCCCTGATGGGCAAGAGGTGACTAAAGTTGTGCCAGCTGTTTCTGAAGAAGTGAAGGATTCTCTTGTGAAGAATATTAGAAGACGAATGACCCCCCAACCCTTGAAAATTAGGGCAGATATTGAAATGAAATGTTTTCAATTTGATGGAGTTATTCACATTAAGGAGGCAATGCGTAAAGCTGAAGCTGCTGGAAATGATGACTGCCCTGTCAAAATTAAACTTGTTGCTCCCCCACTTTATGTTCTTACCACTCAGACGCTGGACAAGGAGCAAGGAATATTGGTTCTCAACAAGGCCATTACATCTTGCACTGAAGCAATTGAACAGCACAAGGGTAAACTTGTGGTTAAGGAGGCACCTAGAGCAGTGAGTGAACGTGATGATAAATTGCTTGCTGAGCACATGGCTAAGCTACGCCAAGATAATGAGGAAGTTAGTGGGGATGAAGACAGTGAGGAGGAAGAAGATACTGGTATGGGTGAGGTTGATGTGGATAATGGTCCCGGGATAACGGAGTGA 1023 0.4731 MAPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLNIDLEELYIHIGWPLYRKYGHAFEAFKIIVTDPDTVLNTLTREVKEVGPDGQEVTKVVPAVSEEVKDSLVKNIRRRMTPQPLKIRADIEMKCFQFDGVIHIKEAMRKAEAAGNDDCPVKIKLVAPPLYVLTTQTLDKEQGILVLNKAITSCTEAIEQHKGKLVVKEAPRAVSERDDKLLAEHMAKLRQDNEEVSGDEDSEEEEDTGMGEVDVDNGPGITE 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00264 340 Coils Coil 303 323 - -
Cca01g00264 340 MobiDBLite consensus disorder prediction 313 329 - -
Cca01g00264 340 PANTHER BNAC04G04870D PROTEIN 2 340 - -
Cca01g00264 340 Pfam S1 RNA binding domain 15 89 IPR003029 GO:0003676
Cca01g00264 340 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 2 340 IPR011488 GO:0003723|GO:0003743
Cca01g00264 340 CDD S1_IF2_alpha 15 90 IPR044126 GO:0003723
Cca01g00264 340 Gene3D EIF_2_alpha 202 324 IPR024055 -
Cca01g00264 340 Gene3D Translation initiation factor 2; subunit 1; domain 2 92 196 IPR024054 -
Cca01g00264 340 SMART S1_6 16 89 IPR022967 -
Cca01g00264 340 SUPERFAMILY eIF-2-alpha, C-terminal domain 200 316 IPR024055 -
Cca01g00264 340 SUPERFAMILY Nucleic acid-binding proteins 7 89 IPR012340 -
Cca01g00264 340 Gene3D - 3 91 IPR012340 -
Cca01g00264 340 SUPERFAMILY eIF2alpha middle domain-like 91 196 IPR024054 -
Cca01g00264 340 ProSiteProfiles S1 domain profile. 18 89 IPR003029 GO:0003676
Cca01g00264 340 MobiDBLite consensus disorder prediction 301 340 - -
Cca01g00264 340 Pfam Eukaryotic translation initiation factor 2 alpha subunit 127 257 IPR011488 GO:0003723|GO:0003743
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00264 2 340 Eukaryotic Initiation Factors Gene Family AT5G05470 81.471 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00264 K03237 - gmx:100805950 623.239