Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00261 ATGGCTGGGAATTCTCCGTGTGCTTCATGTAAGCTTCTGAGACGCAGGTGTACCAAGGACTGCATCTTTGCTCCTTATTTCCCTTCCAGCGATCCTCAAAAGTTCGCCTTAGTTCACAAGGTTTTTGGTGCTAGCAATGTTAGTAAAATGCTCCAGGAACTTCCTCTTCACCAAAGAGCAGATGCTGTGAGTAGTTTGGTGTATGAAGCACATGCAAGAGTTCGAGACCCGGTGTATGGTTGTGTTGGAGCCATATCCTACCTGCAAAACCAGGTTTCTGAGCTTCAAATGCAGCTTGCAGTGGCTCAAGCAGAGATATTCTGCATTCAGATGCAACAGGAGCCAGTGATGCCAAATCCAGAAATGCAAGACCCAGATCACAAATCTTACCTTCTCCAAAATGAACTCCCTCAATACCTCAACTATGCCTCATCTAGCAATGTAATTTATGATTCTCTCTCAAGGGAGAGCATATTTGGACATGACATGGTTTCTTAA 498 0.4458 MAGNSPCASCKLLRRRCTKDCIFAPYFPSSDPQKFALVHKVFGASNVSKMLQELPLHQRADAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEIFCIQMQQEPVMPNPEMQDPDHKSYLLQNELPQYLNYASSSNVIYDSLSRESIFGHDMVS 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00261 165 Coils Coil 85 105 - -
Cca01g00261 165 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Cca01g00261 165 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Cca01g00261 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 157 - -
Cca01g00261 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00261 Cca-Chr1 2760753 2761762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00261 3 132 AS2 family AT2G30130 79.699 8.01e-74 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca01g00261 LOB 2.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00261 - - gmx:121173085 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00261 01 2760753 2761762 Cca05g01630 05 35709761 35710858 PCT