Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00259 ATGGATTCCGACTTCCCAAACAAGGCATTAACGAACACGCGTTTTTCCGACCTGAATCCGCCACTCTCCGAACCGGTTATCGAAGCCCTATCGCAGTCCGGCTTCGATTTCTGCACGCCCGTCCAAGCCGCCACCATACCTCTACTGTGCAGCTACAAGGACGTCGCCGTCGACGCCGCCACCGGTTCCGGCAAAACGCTAGCATTCGTCGTTCCTCTCGTCGAAATTCTACGCCGCTCCTCTTCTCACCCTAAGCCTCACCAGGTGTTAGGGATAATTATATCTCCTACGAGGGAGCTATCAACTCAAATATATCATGTTGCACAACCTTTCATTTCGACATTGGTGAATGTTAAGTCCACGCTTCTTGTTGGTGGAGCAGAAGTGAAAGCAGACATGAGGAAAATAGAGGAGGAAGGAGCAAACGTATTGATTGGCACGCCTGGCCGGCTATATGACATAATGAATCGGATGGATGGTTTGGATTTCAAAAACCTTGAGATTTTGATTTTGGATGAGGCTGATAGACTCTTAGATATGGGATTCCAGAAGCAGATAACTTCTATTATAACTCTCTTGCCTAAGCTTCGTAGAACTGGTCTGTTTTCTGCCACTCAAACTGAGGCTATTGAAGAGCTTGCTAAGGCAGGATTGAGGAACCCTGTGAGGGTTGAAGTTCGAGCACAATCAAAATCAGAAAATGGTCCTGCATCATCCAAACAACCAGAATCTTCAAAAACACCTTCAGGACTTCACATTGAGTACATGGAATGCGAGGCAGATAAGAAGCCATCACAGCTAGTAGATATCCTTATTAAGAATCACCTGAAAAAGATTATAATATATTTCATGACTTGTGCTTGTGTTGATTATTGGGGAGCTGTCCTTCCTTGCCTTTCTGTTTTGAAAGGCTTCTCCTTGATTCCCCTGCATGGAAAGATGAAGCAGTCTGCCAGGGAGAAAGCACTAGCTTCATTTACATCCCTTTCAGATGGAGTTCTTTTATGTACGGATGTTGCAGCACGTGGACTTGACATACCAGGtgtagattgtatagtgcagTATGATCCTCCTCAAGATCCAAATGTTTTCATACATAGAGTAGGTCGAACTGCACGGCTGGGTAAACAAGGTCATGCTGTTGTCTTCTTATTACCAAAGGAGGAGTCTTATGTAGAATTCCTGCGTATAAGAAGAGTTCCTCTTCAAGAGAGATTATGTTCTGATGATGCATCTGATGTTGTTCCGCAGCTTCGTTCTGCTGCAAAAAAAGATCGTGATGTCATGGAAAAGGGAGTCAAGGCTTTTGTCTCTTACATCCGTGCTTATAAAGAGCATCACTGCTCCTATATTTTTAGGTGGAAAGAACTTGAAATTGGAAAATTGGCCATGGGATTTGGCTTATTACAACTCCCTTCAATGCCAGAGGTAAAACACCACTCACTTTCCACTGATGGATTTGAACCAGTTGAAGATATCAAATTGGAGGATATTAAGTTCAGagataaatcacgagagaaacaaagaaagaagaacctgcaggcaaagaaagaagccaaagagaaagaGCCAAAACCTAAGAAACTGAACAAAACCCCAAATGCACCCACTGTCATGCGGAAGAAAACAGCTAAACAGAGACGTGCTCAGCAGACAATGGAAGACGAGGAAGAGTTGATGCAGGAATATCGCTTGTTGAAGAAATTGAAGAAAGGGACCATAGATGAGAATGAATATGCAAAGTTGACTGGCACCGAGGAATTACTTTGA 1770 0.4186 MDSDFPNKALTNTRFSDLNPPLSEPVIEALSQSGFDFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSSSHPKPHQVLGIIISPTRELSTQIYHVAQPFISTLVNVKSTLLVGGAEVKADMRKIEEEGANVLIGTPGRLYDIMNRMDGLDFKNLEILILDEADRLLDMGFQKQITSIITLLPKLRRTGLFSATQTEAIEELAKAGLRNPVRVEVRAQSKSENGPASSKQPESSKTPSGLHIEYMECEADKKPSQLVDILIKNHLKKIIIYFMTCACVDYWGAVLPCLSVLKGFSLIPLHGKMKQSAREKALASFTSLSDGVLLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRVPLQERLCSDDASDVVPQLRSAAKKDRDVMEKGVKAFVSYIRAYKEHHCSYIFRWKELEIGKLAMGFGLLQLPSMPEVKHHSLSTDGFEPVEDIKLEDIKFRDKSREKQRKKNLQAKKEAKEKEPKPKKLNKTPNAPTVMRKKTAKQRRAQQTMEDEEELMQEYRLLKKLKKGTIDENEYAKLTGTEELL 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00259 589 MobiDBLite consensus disorder prediction 231 248 - -
Cca01g00259 589 Gene3D - 3 227 IPR027417 -
Cca01g00259 589 SMART DUF4217_3 413 476 IPR025313 -
Cca01g00259 589 MobiDBLite consensus disorder prediction 227 249 - -
Cca01g00259 589 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 422 IPR001650 -
Cca01g00259 589 MobiDBLite consensus disorder prediction 503 557 - -
Cca01g00259 589 CDD SF2_C_DEAD 254 384 - -
Cca01g00259 589 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Cca01g00259 589 PANTHER RNA HELICASE 25 587 - -
Cca01g00259 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
Cca01g00259 589 CDD DEADc_DDX55 26 224 - -
Cca01g00259 589 Pfam DEAD/DEAH box helicase 39 212 IPR011545 GO:0003676|GO:0005524
Cca01g00259 589 SMART helicmild6 293 375 IPR001650 -
Cca01g00259 589 SMART ultradead3 34 254 IPR014001 -
Cca01g00259 589 PANTHER ATP-DEPENDENT RNA HELICASE DDX55 25 587 - -
Cca01g00259 589 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Cca01g00259 589 Gene3D - 253 484 IPR027417 -
Cca01g00259 589 Pfam Domain of unknown function (DUF4217) 416 474 IPR025313 -
Cca01g00259 589 Coils Coil 539 569 - -
Cca01g00259 589 Coils Coil 503 523 - -
Cca01g00259 589 MobiDBLite consensus disorder prediction 503 529 - -
Cca01g00259 589 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00259 Cca-Chr1 2714566 2719425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00259 13 384 Eukaryotic Initiation Factors Gene Family AT3G19760 29.759 2.44e-45 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00259 K14809 - gmx:100801482 1065.45