Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00255 ATGATGCATAGAAAAAGACATTTACATCAATGGAAGCATCCATTTGATGCTTATCCTTTCGAGGCGTTTTTATCTACATCATGGCAAGCCGTGAAGCTCATACAAATTGAGTCAGGAACTATGACCCTGCATTTTGCAGACAATCACCATATGACCACGGAAAAAGGCCTCTTTTCAGACCTTCGAATAAGGTCAAGGAAAGCTACTTTATCAGATTGCTACAACTTTTTACGACCTGGGATTGACATATGTGTTCTCTCGGCATCTCAGTGTAGTGACAATTCAGATGAATTTGGTGCTAATCATGTGTGGATTGATGCTAAAATAAATTCCATACAGAGAAAAACCCATAATGCAGAGTGTTCGTGTCAGTATTATGTAAACTGCTACGTTGATCAAGGTTCACTTGGTACAGAGATAAGAACTCTTAGTAAGAAGCTTAAAGTAGTTGGAATAAATGAAATTGTCATTCTCCAAAAGCTTGAGCGAAATAGTTGTGAAAACCAACACTATCGATGGGAATCATCTGAAGACTGCTCCACAGTACTACATTCTAAATTGCTCTTCGGAAAATTTCTATCTGACATTTCATGGTTGGTTGTTACATCTGTTGTAAAGAATGTTTCATTCTGTGCAAGATCTGTGGAAAACAGGATTGTGTATCAAATTTTGGGAAGTGATGCCACAAGCTCTTCATTAAACATGAATTCTCATATAAGTGTTGTGAGCTTCAAAGTTGACAAGGAAGGCATGTCGTGGCCCGTTGTTTCTCAAGTTGATGTTTCTGACACCAATAGAAGTGGCCATGAACATGATGATGAAGTGTCACCATCATCTTATGTTGTTGAGGGCTTACGACGATCCAAACGTAGGAACATGCAACCTGAACGTTTCATTGGTTGTGGTAAAGTTTCTGAGATAAAGGTTGGTAATGTTCGAACCTGGCCATACAAGTTCAACAAACGGAATGATGATGACGACAACGACCACGACAATGAAGAGGCATTGCCATTAGCACAGGTGTTTGAATTGCTAGAGAATTGTATAGAAGAGGATGGTGGCAATAATCAAAAGGCCAAGGAAATGAGTTCTTGCCGGGAGATTATAGTGTACCATAGGAGGAATAAAACCAAGGAAGTAAAGTCAAGAGAGGACAATCAAAATGAACATCAAACTCAACTTGCTACTGTTCCCCTTCTTGAGGGAGGTGATTCATCAGCCCTTGAGGATCGTCCTCTCAATGATAAGGTTACTAGAAGTAAGCCACGTAACAGCACCCGTAAGTTTCATAGGAAGAGATTGTTTGATGAGGAAGATTATGCAGATTTTGATCCTGGAAGGGAAGGCATAAATTCCAATCAAGGAGTTAGAGAGAAAAGACACAGTTCATGGTATTCAAGAAGCAAAAGTCAGGATGGAGAACAAGCTTATAAAGATAGAAGCTTAAATGCAGCCGCTTACAAGGAAATGATAGATTCATACTTGAAGGATATTAATAGAATACCAACTACAGAAGAGACACCTATAAAGGACCAGTGGAAGGAAATATGCAACTTGGGGCAAAGGAAGGAAGTAAAAATACCTCAAAGAGAGGATGAGAAAAAAATCTCCGAGATGGATATGTTGTGGGAAGAAATGGAAATGGCATTGGCATCAAGTTATTTTGAAGAAATGAAGGATTCAAATGGTGCCAATTTTGCTGAGACAATGGAAGAATCTAATAACACTTGTCAACATGATTACAGATTGGATGAAGAAATTGGAATCTATTGCTACAAATGTGGCTTTGTGAAAACCGAGATAAAACATGTCACACAACCCTTCATGGAAGTGCAACATCCAGTGAGGCACCAAGAGGAGAAGCAATGCAGTGGAAAAGAGTCAGAGTCAAAGTCTGATAAAGATGATGATTTCCATTTGTTCTCAACTCATGCTTCTAGTGATGAACTTGTATATATGGAACATGATAACGTTTGGAAGTTGATACCTGAACTCAGCGAAAAGATGCATGTCCACCAAAAGAAAGCATTTGAATTTCTTTGGCAAAATATTGGAGGGTCAATGAAACCAACACTTATGGAAGCAGAGTCCAAAAGAATAGGGGGTTGTGTGATATCTCATGCTCCTGGAGCTGGGAAAACTTTTCTCATCATTGCATTTCTCCTTAGCTATTTAAAGCTATTCCCAGGGAAGAAGCCTCTTATCCTTGCACCAAAAACTACACTTCACACTTGGTACAAAGAATTCATCAAATGGGAGATTTCTTTGCCCGTGTATCTGATTCATGGCCATGGAAAGAGAGATTTCAATCAAAATTCAATTGTTCTTCCTGGAGTTCCAAATCCAAGTAAAGATGTAAAGCATGTTTTGGACTGCCTAAACAAGATAAAAAAGTGGCAAGAACACCCTAGTGTTTTAGTCATGAGTTATACTAAATTTCTGTCATTAATTCGAGAGGGTTCAGAGTTCGCACACAGAAAGTATATGGCTAAAGCATTGAGGGAAGGCCCTGGGGTGCTCATACTTGATGAAGGGCACAATCCTAGAAGCACTAAATCAAGGTTGAGGAAAGGTTTGATGAAAGTGGAAACCGACCTAAGAATACTACTTTCAGGTACATTATTTCAGAACAATTTCTGTGAATACTTCAACTCACTTTGCTTGGCAAGACCAAATTTTATTCACGAAGTGCTGAATGGATTAGACCCGAATTACCAAAGGAAAAGCAAAACCGCAGGGAAGGCACGCCATAAACTAGAGTCACGAGCTAGAAAATTGTTCTTAGATAACATTGCTAAGAAAATTGACTCGGATATTGGAAAGGAGAGGATGAATGGTCTAAACATGTTGAGAGAAATCACAAATAGTTTTATAGATGTTTATGAGAGTGGCAATTTTGAGAGTGTTCCCGGTTTGCAAATCTATACGTTGTTAATGAATACAACAGACATGCAACGTGAAATGTTGCTGAAACTTCACACGAGAATGGCCGAGTGCAAAGGTTACCCTCTAGAGTTAGAGCTTTTGGTAACCCTTGGATCAATACATCCATGGCTGGTTCAAACAGTCACATGTGCAAATAAGTTTTTCACCTTGGAGCAACTGAAGCAGCTACGGAAATGCAAGTTTGATGTGAGAATAGGGTCAAAAGTTAAATTTGTTTTGAGCATTGTTTTTCGTGTCATGAGGAGGGAGAAAGTACTCATCTTCTGCCACAACCTTGCACCTATGAAGCTACTAATAGAGTTATTTGAGATGTTCTTCAAATGGGAAAAAGATAGAGAAATTTTGTCAATCAGTGGGGAACTAGATCTCTTTGAACGTGGGAAAGTTATAGATAAGTTTGAGGATCCTAGAGGAGGATCAAAGGTACTTCTTGCTTCAATTACAGCTTGTGCTGAAGGTATCAGCTTGACAGCAGCTTCTAGAGTGGTGTTTTTGGACTCAGAATGGAATCCATCAAAGACAAAGCAGGCTATAGCAAGGGCCTTTCGTCCTGGTCAGCAAAAGATGGTTTATGTGTATCAGCTCTTGGCAACAGGCACATTGGAGGAGGATAAGTACAGAAGAACCACTTGGAAAGAGTGGGTTTCTAGCATGATTTTTAGTGAGGCTTTTGAGGAGAACCCTTCAAAATGGAAAGCAGAGAAGATTGAAGATGATGTTCTGAGGGAAATGGTTGAGGAGGACAAGTCTAAATCAATCCATATGATACTGAAGAATGAAAAGGCTTCAACAAACTGA 3744 0.3934 MMHRKRHLHQWKHPFDAYPFEAFLSTSWQAVKLIQIESGTMTLHFADNHHMTTEKGLFSDLRIRSRKATLSDCYNFLRPGIDICVLSASQCSDNSDEFGANHVWIDAKINSIQRKTHNAECSCQYYVNCYVDQGSLGTEIRTLSKKLKVVGINEIVILQKLERNSCENQHYRWESSEDCSTVLHSKLLFGKFLSDISWLVVTSVVKNVSFCARSVENRIVYQILGSDATSSSLNMNSHISVVSFKVDKEGMSWPVVSQVDVSDTNRSGHEHDDEVSPSSYVVEGLRRSKRRNMQPERFIGCGKVSEIKVGNVRTWPYKFNKRNDDDDNDHDNEEALPLAQVFELLENCIEEDGGNNQKAKEMSSCREIIVYHRRNKTKEVKSREDNQNEHQTQLATVPLLEGGDSSALEDRPLNDKVTRSKPRNSTRKFHRKRLFDEEDYADFDPGREGINSNQGVREKRHSSWYSRSKSQDGEQAYKDRSLNAAAYKEMIDSYLKDINRIPTTEETPIKDQWKEICNLGQRKEVKIPQREDEKKISEMDMLWEEMEMALASSYFEEMKDSNGANFAETMEESNNTCQHDYRLDEEIGIYCYKCGFVKTEIKHVTQPFMEVQHPVRHQEEKQCSGKESESKSDKDDDFHLFSTHASSDELVYMEHDNVWKLIPELSEKMHVHQKKAFEFLWQNIGGSMKPTLMEAESKRIGGCVISHAPGAGKTFLIIAFLLSYLKLFPGKKPLILAPKTTLHTWYKEFIKWEISLPVYLIHGHGKRDFNQNSIVLPGVPNPSKDVKHVLDCLNKIKKWQEHPSVLVMSYTKFLSLIREGSEFAHRKYMAKALREGPGVLILDEGHNPRSTKSRLRKGLMKVETDLRILLSGTLFQNNFCEYFNSLCLARPNFIHEVLNGLDPNYQRKSKTAGKARHKLESRARKLFLDNIAKKIDSDIGKERMNGLNMLREITNSFIDVYESGNFESVPGLQIYTLLMNTTDMQREMLLKLHTRMAECKGYPLELELLVTLGSIHPWLVQTVTCANKFFTLEQLKQLRKCKFDVRIGSKVKFVLSIVFRVMRREKVLIFCHNLAPMKLLIELFEMFFKWEKDREILSISGELDLFERGKVIDKFEDPRGGSKVLLASITACAEGISLTAASRVVFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLATGTLEEDKYRRTTWKEWVSSMIFSEAFEENPSKWKAEKIEDDVLREMVEEDKSKSIHMILKNEKASTN 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00255 1247 Gene3D - 641 932 IPR038718 -
Cca01g00255 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 649 894 IPR027417 -
Cca01g00255 1247 CDD SF2_C_SNF 1042 1178 - -
Cca01g00255 1247 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1053 1214 IPR001650 -
Cca01g00255 1247 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 19 1246 - -
Cca01g00255 1247 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 19 1246 IPR044567 GO:0080188
Cca01g00255 1247 MobiDBLite consensus disorder prediction 614 638 - -
Cca01g00255 1247 Gene3D - 970 1247 IPR027417 -
Cca01g00255 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 989 1230 IPR027417 -
Cca01g00255 1247 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 694 892 IPR014001 -
Cca01g00255 1247 SMART helicmild6 1082 1167 IPR001650 -
Cca01g00255 1247 MobiDBLite consensus disorder prediction 460 476 - -
Cca01g00255 1247 SMART ultradead3 665 897 IPR014001 -
Cca01g00255 1247 MobiDBLite consensus disorder prediction 408 422 - -
Cca01g00255 1247 Pfam Helicase conserved C-terminal domain 1051 1166 IPR001650 -
Cca01g00255 1247 Pfam SNF2-related domain 680 939 IPR000330 GO:0005524|GO:0140658
Cca01g00255 1247 MobiDBLite consensus disorder prediction 376 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00255 Cca-Chr1 2640687 2645791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00255 1096 1185 RAD5 or RAD16-like Gene Family AT5G05130 41.758 1.27e-12 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca01g00255 SNF2_N 9.9e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00255 K10875 - gmx:100781856 1868.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00255 01 2640687 2645791 Cca05g01634 05 35776394 35784981 PCT