Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00253 ATGGAAGATTCCGTCATCAATGTCTTCAATGACACTAAAACTCATCAACTAGTAGTTTGTGTCAAGAATGATAGATCTGTAGGCTCTTTAGGTGTGTGGATTGGGGATAATCCATTCGACTTTGTTATTCCTATCACGTTGTGCCAAATCATCATACACACTTTAATCTCTCGATCACTTCATTATGTTCTCAGGCCTATTCGAACACCCAAATTCGTCTGCTGCGTCGTCGCTGGAATTCTGTTGGGTCCAACATTCATAGGGCGCGAGAGAGCTATCGTGGGGGCTCTATTTCCGGTGAAACAATCTTCAGTTTTGAACACGGTTGCGAAAGTAGCCATTGCTTATTGGGTGTTCATCACTAGTCTCAAAATGGACGTAATGACAACATTAAAAGTAGCGAAACGTTATTGGCGATTTGGTGTAATTCCTTTCTTTTCTTCATTTTTTGTCACAGTAACCCTATTGTTTTGGTACAATCCCACCGTTGCTAGCAGAGGCAAAGTCCAAAACTTCCCCAACATCTTCACCTTGAGCAGTTTCGCTGTGGTGTCTGAAACCCTATCGAACTTAAACCTCGTAGGCACCGAGATGGGGCAGATTGCTCTATCTTCAGCCATGACCAGCGAGATATTGCAGTGGATCACGATGGAGATCCAGTTCAACTCAAAAGAGACCCCGGAATATATGCTTGTGCTTTTGATAAGTGTCAGCGTAATCGCTATGATATGTCTTTGTATTGTGCGACCAATGGTGAAAATGGTTATTGAGAGAACACCACCGGGGAAGCCAATAAAAGAAGCACACGTTATCATCATACTTCTGGGACCTCTAATGATGGCAGCACTTAGTGACGTATTTGGCATATATTTCCTTGTAGGACCTCTCTTCTATGGTTTTGTTTTACCCAGTGGACCCCCCCTGGCGACAACAATTTTGGAGAGAAGTGAAGTGATCATCTCACACTTTCTTATGCCTTTCTTCTACTTGTTCATTGGCTTAAGGACAGATATTACTGGAATTCCTCAGCATTGGCCTGTGGTTCTATCAGTTCTGGCTATCTTACTTGTCGGGTGCTTGGTTAAGGTTCTTGCATGTGTGCTCGTTTCTCCCATGTATAACATTAAACCCAAAAATGGACTCGTGCTTGGCCTCATATTGAACGTCAAGGGTATGGTCGAAATCATCTTTTACAGTAGAATGCACAAACTCAGGATTATTGATAATGAAGTCTTCAGCATATCGGTGATGTACGTGTTGTTCATAACATCAGTTTGCATACCCTTGATTAAATCCTTGTACAGGCACCGTCGGGTGCTGCAAACGCCATCCATACACGAAAGAGGTGTGAGAACAATCCAAAGCATTTTGGAGAACCAAGGGTTCAACATCGTGTCATGTGTTCACACGGACGAACTCGTGCACAGCATGATTGCCCTGATAGAAGCATGCAGCCCCACCATACAAAGCCCCATATCCATCTACGTGGTGCACCTCATTGAACTCGTTGGCAAAACCACACCGATTCTTCTTCCCATGAACGTTAACAACAGAAAATCTTTGTCGGTAAACTACCCCAACACCAACCACATTCTTCGTGCCTTCGAAAATTACTCCAACAACTCAAGTGGACCAGTAAGAATTCTCTCATACGTGAACGTGGCTCCATACAAAAGCATGCATGAAGCAGTTTGCAACCTCGCCGAAGATAGCTCCGTGCATGTCATCATTATTCCGTTTCACCAAAACGACAATTCTTTAAGTAACCACGTGGCAACCAAAGTTCGAGAACTCAACGCAAGCTTTCTCGCAAATGCGCAATGCACGGTGGGGATTCTCGTGGATAGATACTCGATGCTGAGTGGCAGTAGCTCCAAGGTTTCTTTCCACGTTGGAATCTGCTTCATAGGTGGAAAAGACGATAGGGAAGCGTTGGCATTGGGGATTCGAATGTTGGAGCGCATGAACACGCGTGTCACCTTGTTTAGGTTTGTTGTGGTCAACAAAGAACAACATGCGAGTTTTGTGGAGAAAGAAGAGGAGATACTAGAGAGAACGTTGGACGAGAGTTTGGTAGATGAGTTCAAGGCGAATAAAAACTTTAGTAGTGACTTTGTTAACGTGATGTACCACGAGATTGTGGTGGAGGATTGCATTCAGGTGTTGGAAGCGATTCGGGGAATGGAGAACGACTATGACCTAGTGATGGTGGGGAAGAGACATAGCATGGGGGATTTAATGGAAGAGGAAATGTCCAATTTCATGGATAATGCGAAACAGTTGGGGATTTTTGGGGACATGTTGGCATCAAATGAGTTTTGTAAAGGGAGAGTTCCAGTGTTGGTGATGCAGTGTGGTGAGAAACGGGTGAAACAGTTAGAAAATAAAGTTGTTCCTGGTTACTCCACCACTAATTAA 2418 0.4392 MEDSVINVFNDTKTHQLVVCVKNDRSVGSLGVWIGDNPFDFVIPITLCQIIIHTLISRSLHYVLRPIRTPKFVCCVVAGILLGPTFIGRERAIVGALFPVKQSSVLNTVAKVAIAYWVFITSLKMDVMTTLKVAKRYWRFGVIPFFSSFFVTVTLLFWYNPTVASRGKVQNFPNIFTLSSFAVVSETLSNLNLVGTEMGQIALSSAMTSEILQWITMEIQFNSKETPEYMLVLLISVSVIAMICLCIVRPMVKMVIERTPPGKPIKEAHVIIILLGPLMMAALSDVFGIYFLVGPLFYGFVLPSGPPLATTILERSEVIISHFLMPFFYLFIGLRTDITGIPQHWPVVLSVLAILLVGCLVKVLACVLVSPMYNIKPKNGLVLGLILNVKGMVEIIFYSRMHKLRIIDNEVFSISVMYVLFITSVCIPLIKSLYRHRRVLQTPSIHERGVRTIQSILENQGFNIVSCVHTDELVHSMIALIEACSPTIQSPISIYVVHLIELVGKTTPILLPMNVNNRKSLSVNYPNTNHILRAFENYSNNSSGPVRILSYVNVAPYKSMHEAVCNLAEDSSVHVIIIPFHQNDNSLSNHVATKVRELNASFLANAQCTVGILVDRYSMLSGSSSKVSFHVGICFIGGKDDREALALGIRMLERMNTRVTLFRFVVVNKEQHASFVEKEEEILERTLDESLVDEFKANKNFSSDFVNVMYHEIVVEDCIQVLEAIRGMENDYDLVMVGKRHSMGDLMEEEMSNFMDNAKQLGIFGDMLASNEFCKGRVPVLVMQCGEKRVKQLENKVVPGYSTTN 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00253 805 Gene3D - 45 441 IPR038770 -
Cca01g00253 805 PANTHER CATION/H+ EXCHANGER 3 15 789 - -
Cca01g00253 805 PANTHER CATION/H + ANTIPORTER 15 789 - -
Cca01g00253 805 CDD USP_Like 630 741 - -
Cca01g00253 805 Pfam Sodium/hydrogen exchanger family 54 424 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00253 Cca-Chr1 2624569 2627929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00253 31 784 Antiporter Super Family AT2G13620 31.282 7.52e-131 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00253 - - vun:114176193 986.482