Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00251 ATGTCATCACGTGCTCCTTCTCACTCCTCACTACAAAAACAATTCCTTCAACTGTTCCCCTCATGTTCCTACCTATCTTTCTATGCCCTTCTCCACTTCACTCACAACAACAAACACACTCTTCTTGTTCCTCTAACTCAACTCAACTCAACATCTCTTATTCTTTTTACATTCATTGTTTTTATTTTCGTTATGGTAGTGCAGGAAACCAACCCGACTTCACCACGTGGGGTGACAAATGCTGACCATGTTTCTTGTAAGAAGAAAGAAAGATGGAAGATTTGGTCCAAGATGCACAACCCATGTTGTTTTTTCTTTCTCTTGTGTGTTGTGCTTCCCACGTGCTTGAGGCCAGTTTCCTGTGAAGAGGATGGTTGGGATGGGGTGGTTGTGACAGCATCAAACTTGTTAGCACTACAAGCATTCAAGCAAGAGTTGGTTGATCCTGAAGGCTTCTTGAGGAGTTGGAACGACAGTGGCTATGGAGCATGTTCAGGAGGTTGGGTTGGTATCAAGTGTGCTCAGGGACAGGTTATTGTGATCCAGCTTCCGTGGAAGGGGTTGAGGGGGCGCATCACAGATAAAATTGGCCAACTTCAAGGCCTTAGGAAGCTTAGTCTTCATGATAACCTAATCGGGGGCTCAATCCCTTCAACTTTGGGACTTCTTCCCAACCTTAGAGGTGTTCAGTTATTCAACAATAAGCTAACAGGCTCCATCCCTTCTTCTTTAGGTTACTGCCCTTTGCTTCAGTCTCTTGACCTAAGCAACAACTTGCTCACAGGAACAATCCCTTATAGCCTTGCCAATTCCACCAAGCTTTATTGGCTTAACTTGAGTTTTAACTCCTTCTCTGGTCCATTACCAACTAGCCTAACTCACTCATTTTCTCTCACATTCCTTTCTCTTCAGCATAATAATCTATCTGGCCCTCTTCCCAACTCATGGGGTGGGAGTGGGAGTGAGAGTCCCAAGAATGACTTTTTTAGGCTTCAAAATCTGATCTTAGACCATAACTTTTTCACCGGAAATGTTCCTGCTTCTTTGGGTAGCTTAAGAGAACTCAGTGAGGTTTCCCTTAGTCATAACCGGTTTAGTGGAGCTATACCAAATGAAATAGGAACCCTTTCTAGGCTTAAGACACTAGACATTTCTAATAATGCCTTGAATGGGAGCTTGCCTGCTACCCTCTCTAATTTATCCTCACTTACATATCTGAATGCAGAGAACAACCTCCTTGACAATCAAGTCCCTGAATCTTTAGGTACATTGCATAATCTTTCTGTTTTAATTTTGAGTAGGAACCAATTTAGTGGACATATTCCTTCAAGTATTGCAAACATTTCCACGCTTAGGCAGCTTGATTTGTCACTGAATAATCTCAGTGGAGAAATTCCAGTCTCCTTTGACAGTCAAAGTAGTCTAAAACTCTTAAATGTTTCTTACAATAGCCTCTCTGGTTCTGTGCCCGCTCTACTTGCCAAGAGATTCAACTCAAGCTCATTTGTGGGAAATATTCAACTATGTGGCTACAGCCCTTCAACCCCCTGTCTTTCACCAGCTCCATCAGAAGGAGTCATTGCCCCACCTCCTGAAGTGGCAATACACCGCCATCATAGGAAGCTAAGTACCAAAGACATAATTCTCATTGTAGCAGGAGTTCTCCTTGTAGTCCTGATAACACTTTGTTGCATCATGCTCTTCTGCTTGATCAGAAAGAGAGCAACATCAAAGGCAGAGAATGGCAGAGCCAGAGCCGGCGGTACTAGCATAGAAAAAGGAGTCCCTCCTGTTGCTGCTGGTGATGTTGAAGCAGGTGGGGAGGTTGGAGGGAAACTAGTCCATTTTGATGGACCAATGGCTTTCACAGCTGATGATCTCTTGTGTGCAACAGCTGAGATAATGGGAAAGAGCACCTATGGAACTGTGTATAAGGCTATATTGGAGGATGGAAGTCAAGTTGCAGTGAAAAGATTGAGGGAAAAGATCACTAAAGGTCAGAGAGAATTTGAATCAGAAGTTAGTGTTCTAGGAAAAATTAGGCACCCCAATGTTTTGGCTATGAGGGCCTATTACTTGGGACCAAAAGGTGAAAAGCTTCTGGTTTTTGATTATATGCCTAAAGGAAGTCTTGCTTCTTTCCTACATGGTGGTGGAACTGAAACATCCATTGATTGGCCAACAAGGATGAAAATAGCACAGGACTTGGCTCGTGGCTTGTTTTACCTTCATTCCCAGGAGAACATTGTACATGGGAACCTTACATCTAGCAATGTGTTGCTTGATGAGAACACAAATGCTAAAATTGCAGATTTTGGTCTTTCTAGGTTGATGACAACTGCTGCTAATTCCAACGTCATAGCTACTGCTGGAGCATTGGGATACCGTGCACCTGAGCTCTCAAAGCTTAAGAAAGCAAACACTAAAACTGATATCTACAGTCTTGGTGTTATCTTGTTAGAACTCCTAACGAGGAAGTCACCTGGGGTGTCTATGAATGGAGTAGATTTGCCTCAGTGGGTTGCTTCTATTGTCAAAGAGGAGTGGACAAATGAGGTTTTTGATGCTGACTTGATGAGAGATGCATCAACAGTTAGTGATGAGTTGCTAAATACATTGAAGCTTGCTTTGCACTGTGTTGATCCTTCTCCATCAGCACGACCAGAAGTTCATCAGGTGCTCCAGCAGTTGGAAGAGATTAGACAAGAGAGATCAGTCACAGCTAGTCCTGGCGATGATCCTAACATCATATAG 2754 0.4321 MSSRAPSHSSLQKQFLQLFPSCSYLSFYALLHFTHNNKHTLLVPLTQLNSTSLILFTFIVFIFVMVVQETNPTSPRGVTNADHVSCKKKERWKIWSKMHNPCCFFFLLCVVLPTCLRPVSCEEDGWDGVVVTASNLLALQAFKQELVDPEGFLRSWNDSGYGACSGGWVGIKCAQGQVIVIQLPWKGLRGRITDKIGQLQGLRKLSLHDNLIGGSIPSTLGLLPNLRGVQLFNNKLTGSIPSSLGYCPLLQSLDLSNNLLTGTIPYSLANSTKLYWLNLSFNSFSGPLPTSLTHSFSLTFLSLQHNNLSGPLPNSWGGSGSESPKNDFFRLQNLILDHNFFTGNVPASLGSLRELSEVSLSHNRFSGAIPNEIGTLSRLKTLDISNNALNGSLPATLSNLSSLTYLNAENNLLDNQVPESLGTLHNLSVLILSRNQFSGHIPSSIANISTLRQLDLSLNNLSGEIPVSFDSQSSLKLLNVSYNSLSGSVPALLAKRFNSSSFVGNIQLCGYSPSTPCLSPAPSEGVIAPPPEVAIHRHHRKLSTKDIILIVAGVLLVVLITLCCIMLFCLIRKRATSKAENGRARAGGTSIEKGVPPVAAGDVEAGGEVGGKLVHFDGPMAFTADDLLCATAEIMGKSTYGTVYKAILEDGSQVAVKRLREKITKGQREFESEVSVLGKIRHPNVLAMRAYYLGPKGEKLLVFDYMPKGSLASFLHGGGTETSIDWPTRMKIAQDLARGLFYLHSQENIVHGNLTSSNVLLDENTNAKIADFGLSRLMTTAANSNVIATAGALGYRAPELSKLKKANTKTDIYSLGVILLELLTRKSPGVSMNGVDLPQWVASIVKEEWTNEVFDADLMRDASTVSDELLNTLKLALHCVDPSPSARPEVHQVLQQLEEIRQERSVTASPGDDPNII 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00251 917 ProSiteProfiles Protein kinase domain profile. 629 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00251 917 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 86 908 - -
Cca01g00251 917 Pfam Leucine rich repeat 426 485 IPR001611 GO:0005515
Cca01g00251 917 Pfam Leucine rich repeat 353 413 IPR001611 GO:0005515
Cca01g00251 917 Gene3D Ribonuclease Inhibitor 393 518 IPR032675 -
Cca01g00251 917 Gene3D Ribonuclease Inhibitor 134 292 IPR032675 -
Cca01g00251 917 PRINTS Leucine-rich repeat signature 250 263 - -
Cca01g00251 917 PRINTS Leucine-rich repeat signature 376 389 - -
Cca01g00251 917 Pfam Protein tyrosine and serine/threonine kinase 632 897 IPR001245 GO:0004672|GO:0006468
Cca01g00251 917 Gene3D Transferase(Phosphotransferase) domain 1 707 913 - -
Cca01g00251 917 Pfam Leucine rich repeat N-terminal domain 136 173 IPR013210 -
Cca01g00251 917 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 86 908 - -
Cca01g00251 917 SUPERFAMILY L domain-like 172 513 - -
Cca01g00251 917 Gene3D Ribonuclease Inhibitor 293 392 IPR032675 -
Cca01g00251 917 SMART LRR_bac_2 376 396 - -
Cca01g00251 917 SMART LRR_bac_2 400 420 - -
Cca01g00251 917 SMART LRR_bac_2 472 492 - -
Cca01g00251 917 Gene3D Phosphorylase Kinase; domain 1 635 706 - -
Cca01g00251 917 CDD STKc_IRAK 635 900 - -
Cca01g00251 917 SUPERFAMILY Protein kinase-like (PK-like) 633 902 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00251 Cca-Chr1 2602656 2605803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00251 126 901 Receptor kinase-like Gene Family AT3G51740 62.835 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca01g00251 PK_Tyr_Ser-Thr 4.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00251 - - gmx:547641 1434.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00251 01 2602656 2605803 Cca05g01638 05 35824547 35827315 PCT