Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00246 ATGGCAGCTATTGCAGCTGGAACAGGAAATAAGACATTGGTATGCCAAGATCCCCACAGTTATGGTCACTCGGATATCTGGCACTCAGGCAACCCTTTCCAGTCCCCCTCTAGTCTTCTCTTTATGCAGGTTTCTTTGATTACCTTAGTCACACAGTTCATAGACAAAGGTCTCAAGCCACTAGGACAATCCTCTCTTGTATCCCAGATTCTTGGTGGAGTGGTGTTTGGACCATCAGTTTTGGGGCACAAAAAGATTCTAGGTCAACTCTTATTCCCCATAAAGGGTGCTCTAGTGCTTGAAACAGTTGCATCGTTTGGCCTCATGTTCTTCTTCTTCATATGGTGCGTTAAAATGGATGTTGCCACAATGTTGAAGACGGAAAAGCTGGCCATCACTCTTGGTATTTCTATATTCTCACTCACATTGATAATCCCTACTGCACTGGCCTTTCTGTTGAAGAAATATGTTCCAATGGACAAGAGTCTCGCTAACGCACTGCCCTTTCTAGCTGTCTCACAAACCTTAACTGCGTTCATTAGCATAGCAGTGCTCTTGACAGATCTCAAAGTCCTTAACACCGACTTAGGACGTTTAACCATGTCAGCAGCGATGTTTGCTGATGTTGCGGGTTTTACTTTGACAGTGGTTTTGTTTGCAATAATGCAGAACAAGAGTCATAACCTTTTTAATCTAGTAATCATCCTTGTAGCCACAGTTTTATTCATGCTTGTTATTATATATGTGTTGCGGCCAGCAATACTTTGGATGGTAAAGCATGCAGGAAATGGTTCAGTTAATGAAATTTGCATTGTTTGCATCTTTCTCTTTGTTCTCTTGTCTGGACTTCTCAGTGAGTTTATTGGGCAGCATTTTATTATGGGACCGATAATTTTAGGCCTGGCTGTTCCAGAAGGGCCGCCCTTAGGAACAGCTTTGATGACCAAATTGGACACAATCTGTTTGACATTTCTTTATCCCATCTACCTTGCTGTTAATGGGTTGCAAACTGATATCTTCAAAATCGATATGCAGTCTCTCTGGATTTTGTGTCTTGTACTGGTTGCGGCTTTCTTTGTAAAGATTGGTGCTTGTTTTGTGATTGGCCTACTTCTGAATGGAAGGGGTATAGCTGAGATTAGCATGTACAATTTGTGGACAGCAAGCAAGCTACTATCGGAACAAGAATTCTCATTGATGGTGATTTCCATTTTAGTAGTAAATGCTATATTAGCACCACTCATAAAATACATATATGATCCTTCAGAACAATACCAGACCGGAAGAAGATGCACAATTCAACACAATAAGCGAGATTCGGAGCTTCGACTCATGGTGTGCATTCACAACAATGACAACCTTCCCACAATTCTCAACCTCTTAGAAGCATCCTATGCAAGCAGAGAGAACACTGTCACGGTCACAGCATTAGTCCTAGTGGAGCTTCATGGAAGAGCAAGGCCTATTCTTGTTGCTAACCAACCCTATGATGACCTTCGCTCGGGGTCATGCAATGCAAATCACATTGACAATGCCCTTAGGCAATATGCACGGCAGAATGAAGGATATGTATCTGTTCAATCTTTCACTTCAATCTCCACATTTGACACCATGTATGATGACATTTGCCGAATATCACTAGATAGCGGAGCCAACATTTTGATCATTCCATTTCACAAGAGATGGGAAATAGATGGAACCGTTGAGGTTTCTCATAGGTCAATCAGAACCGTGAACATTAAAGTCCTCGAAATGGCACCATGTTCTGTTGGTATTTTAGTTGATAGAGGCACCTTAAGTGCTTCTCCATCACTCTTGATGGCTAGAGCAGCATACTATGTTGCTGTGTTATTCGTCGGGGGTGCAGATGATGCTGAGACACTAGCCTATGGTACTAGAATGGCTAGGCATGAATCTGTGTTTGTGACAGTGGTTAGGTTCCTTCTGTTTGGTGAGGAAAATTCTAAGGATAGAAAACGTGATAGTGATCTTATAGATGAATATAGATACTACAATGCTGGAAACCGTAGGTTTGAGATATTGGATGAAGTGGTGAAAGATGGAATAGAGATGTCTAGCTGCATAAGAAGGTTGGTGGATTATTTTGATCTTGTGATGGTGGGGAGGGAGCATCCAGATAGTGTTTTGTTTCAGGGACATGACCATTGGAGTGAGTGTCCAGAGTTAGGGGTCGTTGGGGACATGCTAGCATCACCAGATTTTGCGACCAAGGCATCGGTGTTGATTGTGCAACAACAGAGAATAAGAGGAAGGTTTGCGACACAAAGTCTGAATCCTATGCCAAATCGCAAAGATCAGCTCGTGCATGATGTTCCAATCGATCACACGTTAAGTCCTTCATGTACTATTTCAGTCGACAAATAA 2385 0.4222 MAAIAAGTGNKTLVCQDPHSYGHSDIWHSGNPFQSPSSLLFMQVSLITLVTQFIDKGLKPLGQSSLVSQILGGVVFGPSVLGHKKILGQLLFPIKGALVLETVASFGLMFFFFIWCVKMDVATMLKTEKLAITLGISIFSLTLIIPTALAFLLKKYVPMDKSLANALPFLAVSQTLTAFISIAVLLTDLKVLNTDLGRLTMSAAMFADVAGFTLTVVLFAIMQNKSHNLFNLVIILVATVLFMLVIIYVLRPAILWMVKHAGNGSVNEICIVCIFLFVLLSGLLSEFIGQHFIMGPIILGLAVPEGPPLGTALMTKLDTICLTFLYPIYLAVNGLQTDIFKIDMQSLWILCLVLVAAFFVKIGACFVIGLLLNGRGIAEISMYNLWTASKLLSEQEFSLMVISILVVNAILAPLIKYIYDPSEQYQTGRRCTIQHNKRDSELRLMVCIHNNDNLPTILNLLEASYASRENTVTVTALVLVELHGRARPILVANQPYDDLRSGSCNANHIDNALRQYARQNEGYVSVQSFTSISTFDTMYDDICRISLDSGANILIIPFHKRWEIDGTVEVSHRSIRTVNIKVLEMAPCSVGILVDRGTLSASPSLLMARAAYYVAVLFVGGADDAETLAYGTRMARHESVFVTVVRFLLFGEENSKDRKRDSDLIDEYRYYNAGNRRFEILDEVVKDGIEMSSCIRRLVDYFDLVMVGREHPDSVLFQGHDHWSECPELGVVGDMLASPDFATKASVLIVQQQRIRGRFATQSLNPMPNRKDQLVHDVPIDHTLSPSCTISVDK 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00246 794 Gene3D - 38 427 IPR038770 -
Cca01g00246 794 PANTHER CATION/H(+) ANTIPORTER 15-LIKE 9 765 - -
Cca01g00246 794 PANTHER CATION/H + ANTIPORTER 9 765 - -
Cca01g00246 794 Pfam Sodium/hydrogen exchanger family 46 405 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00246 Cca-Chr1 2557789 2561501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00246 1 752 Antiporter Super Family AT2G13620 35.094 1.71e-152 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00246 - - gmx:100779700 1242.25