Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00240 ATGTCTCCGGCGGCAGGACTCAACGTCCCTCTCCTGGGCGAATCCAAAGCGGCGCCGGCGCCGGCTTCGGTCCCCGGTGCGGTGTTCAATGTGGCGACCAGCATCGTCGGCGCCGGAATCATGTCGATTCCGGCGATCATAAAGGTTCTCGGCGTGATTCCTGCTCTCGTCATGATTCTCGTGGTGGCCGTGCTGGCTGAGCTATCCGTCGACTTCCTCATGCGCTTCACGCATTCCGGCGAAACGACAACGTACGCCGGCGTCATGAGGGAGGCGTTCGGATCTCCGGGAGCGTTGGCGGCGCAACTTTGCGTCATCGTCACCAACGTTGGGGGTTTAATTCTCTACCTTATCATCATCGGGGATGTGCTGTCTGGGAAGCAAAATGGAGGTGAAGTGCATTTGGGTCTTTTGCAACAGTGGTTCGGAACTCACTGGTGGAATTCCAGGGAATTCGCTTTGTTTTTCACCTTGGTCTTTGTAATGCTTCCATTGGTATTGTATCGACGTGTAGAGTCATTGAAGTACAGCTCTGCAGTGTCAACTCTTCTTGCAGTGGCTTTTGTTGGCATATGCTGTGGGTTGGCTATATCTGCTCTGGTGCAAGGAAAAACAAAAACTCCTAGATTGTTTCCTAAGTTAGACTACCAAACCTCATTCTTTGATCTGTTCACTGCAGTTCCTGTTGTTGTCACAGCCTTCACATTTCATTTCAATGTGCATCCCATTGGGTTTGAACTTGCCAAGCCATCTCAAATGACAAAAGCAGTTCGATTGGCATTGTTGCTTTGTGCTGTGATCTACATTACCACAGGCCTATTTGGGTACCTGTTATTCGGGGATTCAACACAGTCAGACATTCTCATCAATTTTGACCAGAATGTTGATTCCACGGTTGGTTCCTTGCTCAACGGTTTGGTCCGTGTAAGCTATGCACTTCACATCATGCTGGTGTTTCCTCTCTTGAACTTCTCTTTAAGAGCCAACATAGATGAAGTTCTCTTCCCCAAGAAGCCTCAGCTAGCCACAGACAACAAAAGATTTGTGATCCTCACTCTGGTGCTACTTGTATTCTCCTACCTTGCAGCTATAGCAATCCCAGATATTTGGTACTTCTTTCAGTTTCTTGGATCATCATCCGCAGTGTGCCTTGCCTTCATTTTCCCCGGCTCTATTGTTTTAAGGTAA 1188 0.4874 MSPAAGLNVPLLGESKAAPAPASVPGAVFNVATSIVGAGIMSIPAIIKVLGVIPALVMILVVAVLAELSVDFLMRFTHSGETTTYAGVMREAFGSPGALAAQLCVIVTNVGGLILYLIIIGDVLSGKQNGGEVHLGLLQQWFGTHWWNSREFALFFTLVFVMLPLVLYRRVESLKYSSAVSTLLAVAFVGICCGLAISALVQGKTKTPRLFPKLDYQTSFFDLFTAVPVVVTAFTFHFNVHPIGFELAKPSQMTKAVRLALLLCAVIYITTGLFGYLLFGDSTQSDILINFDQNVDSTVGSLLNGLVRVSYALHIMLVFPLLNFSLRANIDEVLFPKKPQLATDNKRFVILTLVLLVFSYLAAIAIPDIWYFFQFLGSSSAVCLAFIFPGSIVLR 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00240 395 Pfam Transmembrane amino acid transporter protein 22 392 IPR013057 -
Cca01g00240 395 PANTHER AMINO ACID TRANSPORTER 3 394 - -
Cca01g00240 395 PANTHER AMINO ACID TRANSPORTER, TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN-RELATED 3 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00240 Cca-Chr1 2495414 2498361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00240 9 395 Amino Acid or Auxin Permease AAAP Family AT3G56200 62.016 6.57e-170 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00240 - - gmx:100815694 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00240 01 2495414 2498361 Cca05g01651 05 35897843 35901434 PCT
Cca05g01652 05 35907235 35910471 Cca01g00240 01 2495414 2498361 PCT